Hi, I have a proteomics data, which has been analyzed using Proteome Decoverer 2.4. The data has protein accession number ,abundance. I wonder how I perform a heatmap for protein abundance with clustering? Thank you for your help!
Update:If I have three control and three treatment samples tested in expression in some genes. To perform the heatmap, should I firstly received the fold changes? How I calcute these values?