I am creating a Shiny server and would like to show the user protein structures from PDB file. I tried to search for a package that is able to do that, but could not find one. bio3d can write the output to open by pymol and Rpdb have a visualization, but unfortunately it is not very good....
Is there any package or workaround that I am not aware of? Or any workaround if cannot be done by a package?
Don't know much about Shiny, but as its web based, can you make use of JSmol/Jmol or something?
Thanks, I will look into it!
PV is great for this, but it's JS not R
Thank you both, I hoped to avoid messing around with JS, but these seem good.
Are you hoping to display a dynamic structure or just a static one? If it's the latter, you could perhaps simply fetch an image of the protein from PDB and display that directly?
Thank you for the answer. I have custom PDB files, I cannot just fetch unfortunately