Question: Tool perfect for data repository
0
gravatar for saj98
20 days ago by
saj98110
saj98110 wrote:

Hello everyone

I and my collogues got acceptance to publish our data in Endocrinology journal. They asked to create a data repository before final acceptance. Would be possible to guide me for a perfect tool for such purpose? I really appreciate your help Thanks

rna-seq sequence genome • 80 views
ADD COMMENTlink written 20 days ago by saj98110

People typically upload their NGS raw data to NCBI (SRA). Is that an option here? They have extensive documentation on how to do that.

ADD REPLYlink written 20 days ago by ATpoint40k

I am referring to Rat germ cells RNAseq data. I will try NCBI. Thank you so much

ADD REPLYlink written 20 days ago by saj98110

Yes, just upload to NCBI like everyone else. No need to reinvest the wheel here ;-)

ADD REPLYlink written 20 days ago by ATpoint40k

If you are referring to creating a repository for any software that was written for this project then create a repo on GitHub.

Consider CodeOcean or other solutions for runnable Biostars answers? may also be a novel option where you can provide a way to reproduce your entire analysis.

ADD REPLYlink written 20 days ago by genomax91k

The data analysis was done by Genialis, Inc (Houston, TX). Shall I create a repo on GitHub as well.

ADD REPLYlink written 20 days ago by saj98110

Repo's on GitHub are for software. Sounds like you are referring to raw sequence data. For that NCBI SRA or EBI-ENA would be appropriate database.

ADD REPLYlink written 20 days ago by genomax91k
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