network construction in cytoscape
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7 months ago
parinv ▴ 30

I followed the wgcna tutorial and got node and edge files for Cytoscape, I imported both the files to the Cytoscape software. Now, both these files are showing two different networks and I want to merge these files to construct one network. And also how to choose source and target options while importing data?

Can anyone help me with this problem? can I merge this file in the tutorial or is there any other way to merge it in the software itself?

Thank you

Parin.

cytoscape • 346 views
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Hi parinv

Can you point us to the tutorial you are following ?

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this tutorial wgcna tutorial by Peter Langfelder and Steve Horvath

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This, being just a link, does not seem to answer OP's question. Please add some detail or move it to a comment.

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7 months ago
scooter ▴ 450

Hi Parin, You need to import the edge file as a network first (File->Import->Network from File...) , then import the node file as a table (File->Import->Table from File...). Essentially, the edge file defines the network, and the node file contains additional information about the nodes.

-- scooter

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