Question: Downloading HLA typing for human
0
gravatar for A
4 weeks ago by
A3.9k
A3.9k wrote:

Hello

From where I can download all HLAtyping, HLA-A, HLa-B,HLA-C,and class II files for human?

Thank you so much

neoantigen wgs • 118 views
ADD COMMENTlink modified 4 weeks ago by ATpoint42k • written 4 weeks ago by A3.9k

Do you mean fasta?

ADD REPLYlink written 4 weeks ago by WouterDeCoster44k

Sorry I don't know but I think something like this

HLA-A01:01
HLA-A01:04
HLA-A02:01
HLA-A02:06
HLA-A02:89
HLA-A03:01
HLA-A03:21
HLA-A03:26
HLA-A11:01
HLA-A23:01
HLA-A24:02
HLA-A24:03
HLA-A25:01
HLA-A26:01
HLA-A29:01
HLA-A29:02
HLA-A30:01
HLA-A30:02
HLA-A31:01
ADD REPLYlink modified 4 weeks ago • written 4 weeks ago by A3.9k
3
gravatar for ATpoint
4 weeks ago by
ATpoint42k
Germany
ATpoint42k wrote:

https://www.ebi.ac.uk/ipd/imgt/hla/download.html

ADD COMMENTlink written 4 weeks ago by ATpoint42k

Sorry @ATpoint

I have found files of some HLA type named

mhcflurry_alleles.txt , netMHCII_alleles.txt , netMHCIIpan_alleles.txt , netMHC_alleles.txt and netMHCpan_alleles.txt

from here https://github.com/immune-health/antigen.garnish/tree/master/inst/extdata

Do you think if I combine these HLAs together, that would be common HLA types in Human for neoantigen load prediction?

ADD REPLYlink modified 4 weeks ago • written 4 weeks ago by A3.9k
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