I realized my bowtie "--no-unal is not present in the help menu, hence I cant add the option when mapping. I have uninstalled and reinstalled bowtie but still same thing? Anyone know why this is? Mysterious. Help
Are you sure? I tested some recent Bowtie versions (e.g., version 1.3.0), and all have this parameter:
--no-unal suppress SAM records for unaligned reads
Its strange cos on my other devices I have it, but not in my magnolia account. And yes I am sure
What is magnolia?
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