Hi, I have some very simple questions,
Is possible to load the Exonerate's output (GFF2) in Artemis ?
... I trying with some scripts and exe to convert but without success (processexonerategff3fast.pl; gffread)
If the first question is not. Can Apollo load GFF2 and/or GFF3?
... I trying to install apollo but I have some errors in the installation
Or ... Can you tell me another program to predict genes by homology, and which format is the output, GFF2 or GFF3, please please please?
... I've desperate, I posted here before but still I can not visualize my annotation format.
Please, any help.
Hi Zev, I use the script that you tell me, but it show a little error, "gff_version|gf|v|:s",
$ exonerate -q Scaffold.fa -Q dna -t krt.fa -T dna -m e2g --refine region --showtargetgff yes --ryo ">%qi length=%ql alnlen=%qal\n>%ti length=%tl alnlen=%tal\n" > out.exonerate $ ./process_exonerate_gff3.pl -t EST out.exonerate > out.gff Error in option spec: "gff_version|gf|v|:s"
I add "-gf 3" and in othe order I add "-gff_version 3" and they both display the same error. can you help me