How to identify specific region using Mauve?
Entering edit mode
2.9 years ago
A_heath ▴ 160

Hi all,

My goal is to find specific genomic regions in a strain of interest in order to design specific primers.

To do that, I aligned multiple genomes closely related to the strain to see if there is any specificity. However I am having trouble interpreting Mauve data even with the user guide.

If I understood correctly the specific region are in white, right? Is there a way to get specific sequences in fasta format?

Here is what I obtained with Mauve:

Here is what I obtained with Mauve:

Mauve primers • 792 views

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