Question: How to identify specific region using Mauve?
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gravatar for Audrey
5 weeks ago by
Audrey30
France
Audrey30 wrote:

Hi all,

My goal is to find specific genomic regions in a strain of interest in order to design specific primers.

To do that, I aligned multiple genomes closely related to the strain to see if there is any specificity. However I am having trouble interpreting Mauve data even with the user guide.

If I understood correctly the specific region are in white, right? Is there a way to get specific sequences in fasta format?

Here is what I obtained with Mauve:

Here is what I obtained with Mauve:

mauve primers specific region • 139 views
ADD COMMENTlink modified 5 weeks ago • written 5 weeks ago by Audrey30
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