How to identify specific region using Mauve?
0
0
Entering edit mode
4 months ago
Audrey ▴ 50

Hi all,

My goal is to find specific genomic regions in a strain of interest in order to design specific primers.

To do that, I aligned multiple genomes closely related to the strain to see if there is any specificity. However I am having trouble interpreting Mauve data even with the user guide.

If I understood correctly the specific region are in white, right? Is there a way to get specific sequences in fasta format?

Here is what I obtained with Mauve:

Here is what I obtained with Mauve:

Mauve Specific region primers • 201 views
ADD COMMENT

Login before adding your answer.

Traffic: 1613 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6