I have my data as "10x" format.
How can I convert this to .cloupe format to view in the 10x loupe browser?
The .cloupe file contains additional information that is not available in those three files, so it would not be possible to convert them.
I asked 10x once...you can't. You need to run cellranger on the fastqs to make a loupe file.
Hmm.. Someone needs to reverse engineer the .cloupe format :)