10x to cloupe
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4 months ago
rmf ★ 1.2k

I have my data as "10x" format.

barcodes.tsv
genes.tsv
matrix.mtx

How can I convert this to .cloupe format to view in the 10x loupe browser?

10x single-cell transcriptomics • 280 views
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The .cloupe file contains additional information that is not available in those three files, so it would not be possible to convert them.

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4 months ago
swbarnes2 9.9k

I asked 10x once...you can't. You need to run cellranger on the fastqs to make a loupe file.

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