Question: Stacks 1.44 Error
0
virtualinterlect • 0 wrote:
Hi,
I installed stacks using conda, and stacks 1.44 was installed. However, I would have loved to have the recent version 2.53 at least.
I decided to run denovo.pl
on the version 1.44 and the error message I got was
Unknown command line option: '--popmap'
My command is
denovo_map.pl --samples /public/home/WHC_BBT/Substacks21/ \
--popmap /public/home/WHC_BBT/Substacks21/popu-sub.txt \
-o /public/home/WHC_BBT/Substacks21/M3/ \
-M 3\
-n 3 \
-X "populations: -r 0.8 -T 10" \
--paired
How can I overcome this?
Do I need to remove 1.44 and install 2.53 directly instead of using conda?
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modified 12 days ago
by
h.mon ♦ 32k
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written
12 days ago by
virtualinterlect • 0
Please use the formatting bar (especially the
code
option) to present your post better. You can use backticks for inline code (`text` becomestext
), or select a chunk of text and use the highlighted button to format it as a code block. If your code has long lines with a single command, break those lines into multiple lines with proper escape sequences so they're easier to read and still run when copy-pasted. I've done it for you this time.