I am performing ChIP-seq data analysis and I am currently in the process of generating .bigWig files using
bamCoveragefrom the deepTools suite.
I have data for both narrow histone marks, such as H3K4me3, but also broader marks as H3K36me3.
I am aware of the fact that probably I should choose appropriately an integer value for
--smoothLengthparameters, but I am not exactly sure what values are the most appropriate for both cases.
Any opinion would be very appreciated!