Question: Haplotypes For Each Sample
0
gravatar for AsoInfo
6.9 years ago by
AsoInfo230
Bonn, Germany
AsoInfo230 wrote:

Hello all,

I have some samples for haplotyping. I have used Haploview for LD plot and haplotypes. Is there any way to have the haplotypes for each sample in Haploview. It gave me the individual summary for each sample but actually only in percentages. I want to have the haplotypes written for each sample.

Kindly let me know if there are other preferred softwares for this purpose.

Thanks in advance!

haplotype haploview • 1.5k views
ADD COMMENTlink written 6.9 years ago by AsoInfo230
0
gravatar for Deniz
6.9 years ago by
Deniz140
Cambridge
Deniz140 wrote:

Hi,

What format is your data in?

ADD COMMENTlink written 6.9 years ago by Deniz140
1

please add this as a comment not as an answer then delete this answer (we will soon have a feature to that allows one to move an answer to a comment). Thanks

ADD REPLYlink written 6.9 years ago by Istvan Albert ♦♦ 80k

Thanks for your reply!

The data is genotypic (based on alleles). It is in PED format (as required by Haploview)

ADD REPLYlink written 6.9 years ago by AsoInfo230
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