Haplotypes For Each Sample

Question

[AsoInfo]

Hello all,

I have some samples for haplotyping. I have used Haploview for LD plot and haplotypes. Is there any way to have the haplotypes for each sample in Haploview. It gave me the individual summary for each sample but actually only in percentages. I want to have the haplotypes written for each sample.

Kindly let me know if there are other preferred softwares for this purpose.

Thanks in advance!

[rimgubaev]

I got a similar problem! Have you solved this one? There is also a question at the RG: https://www.researchgate.net/post/How_to_link_haploblock_identified_by_Haploview_to_subjects

Answer 1

[Deniz]

Hi,

What format is your data in?

[Istvan Albert]

please add this as a comment not as an answer then delete this answer (we will soon have a feature to that allows one to move an answer to a comment). Thanks

[AsoInfo]

Thanks for your reply!

The data is genotypic (based on alleles). It is in PED format (as required by Haploview)