Haplotypes For Each Sample
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9.3 years ago
AsoInfo ▴ 300

Hello all,

I have some samples for haplotyping. I have used Haploview for LD plot and haplotypes. Is there any way to have the haplotypes for each sample in Haploview. It gave me the individual summary for each sample but actually only in percentages. I want to have the haplotypes written for each sample.

Kindly let me know if there are other preferred softwares for this purpose.

Thanks in advance!

haplotype haploview • 2.1k views
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I got a similar problem! Have you solved this one? There is also a question at the RG: https://www.researchgate.net/post/How_to_link_haploblock_identified_by_Haploview_to_subjects

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9.3 years ago
Deniz ▴ 140

Hi,

What format is your data in?

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please add this as a comment not as an answer then delete this answer (we will soon have a feature to that allows one to move an answer to a comment). Thanks

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Thanks for your reply!

The data is genotypic (based on alleles). It is in PED format (as required by Haploview)

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