Clustering Softwares For Clustering Genes Expression Or Drugs Activity

Question

[monukmr98]

Hi all

I want to cluster genes on the basis of their expression values. Can someone suggest me good "CLUSTERING SOFTWARES" (generic or specialised); where I can give input file of correlation matrix of expression values of genes in different samples and get the clusters based upon correlation values of gene expression (preferrably in the form of a denderogram/tree).

Thanks in advance.

Answer 1

[Sukhi Singh]

I think Cluster3 combined with JavaTreeView do exactly what you want. Read the manual, they are pretty powerful and fast in handling huge matrices.

Cheers

[monukmr98]

thanks sukhdeep for help

Answer 2

[theobroma22]

Mfuzz Bioconductor package.