Question: Clustering Softwares For Clustering Genes Expression Or Drugs Activity
0
gravatar for monukmr98
7.5 years ago by
monukmr9860
United States
monukmr9860 wrote:

Hi all

I want to cluster genes on the basis of their expression values. Can someone suggest me good "CLUSTERING SOFTWARES" (generic or specialised); where I can give input file of correlation matrix of expression values of genes in different samples and get the clusters based upon correlation values of gene expression (preferrably in the form of a denderogram/tree).

Thanks in advance.

ADD COMMENTlink modified 2.6 years ago by theobroma221.1k • written 7.5 years ago by monukmr9860
3
gravatar for Sukhdeep Singh
7.5 years ago by
Sukhdeep Singh10.0k
Netherlands
Sukhdeep Singh10.0k wrote:

I think Cluster3 combined with JavaTreeView do exactly what you want. Read the manual, they are pretty powerful and fast in handling huge matrices.

Cheers

ADD COMMENTlink written 7.5 years ago by Sukhdeep Singh10.0k

thanks sukhdeep for help

ADD REPLYlink written 7.5 years ago by monukmr9860
0
gravatar for theobroma22
2.6 years ago by
theobroma221.1k
theobroma221.1k wrote:

Mfuzz Bioconductor package.

ADD COMMENTlink written 2.6 years ago by theobroma221.1k
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