Is there any way to get all the human genes with their ENSG ID, ENSP ID, HGNC ID, and Entrez ID. Because while doing ID conversion I always fail to convert some of the IDs, either one or the other counterpart is missing, for which I have to manually search the database. Is there a way to make a comprehensive list of these genes with all these IDs in humans??????
Question: Make List Of All Human Gene Ids (Ens, Hgnc, Entrez) To Ease Conversion Of Ids
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ismeet.kaur • 40 wrote:
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modified 7.1 years ago
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Ian ♦ 5.6k
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7.1 years ago by
ismeet.kaur • 40
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Assa Yeroslaviz • 1.2k wrote:
did you try biomaRt?
I think it is also possible with eutils, though I didn't try it.
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Irsan • 7.0k wrote:
Have a look at the international protein index (IPI) from EBI. They have prepared plain text files with gene cross references to many resources. For some reason the link to the ftp site seems to be broken but as soon as you find the right one you may find the file you are looking for
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What is the 2015 way of doing this? Thanks.
Have you posted your code somewhere????