I am trying to read more about methods available/recommended for clustering gene expression data. Basically the input is a matrix of gene expression values from RNA-Seq differential expression analysis. In this case we have 10 different time points/ conditions.
We are trying to find out clusters which represent the states of the set of the genes across these different time points. Google/paper search did lead me to few hits but I was wondering if I can reach out to folks who have done this analysis in the past and learn from their experience.