Question: Bed For Agilent Sureselect All Exon Kits ?
4
gravatar for Pierre Lindenbaum
7.2 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum125k wrote:

My lab has sequenced an exome using the "Agilent SureSelect All Exon Kits" ( http://www.genomics.agilent.com/CollectionSubpage.aspx?PageType=Product&SubPageType=ProductDetail&PageID=3041 )

allez, une petite image pour faire joli

Does anyone knows where I can find a BED describing the captured regions ?

P.

exome bed next-gen agilent • 20k views
ADD COMMENTlink modified 7.1 years ago • written 7.2 years ago by Pierre Lindenbaum125k
1

According to this post Human Exome Capture Library Coordinates Download , maybe you can find the information in Agilent's Earray https://earray.chem.agilent.com/earray/

ADD REPLYlink written 7.2 years ago by JC9.3k

its says it moved to https://earray.chem.agilent.com/suredesign/ , same information from https://twitter.com/GenBioStats/status/271981044129992704 . But I still cannot register+login for the moment.

ADD REPLYlink written 7.2 years ago by Pierre Lindenbaum125k
1

I don't have access too, maybe next week I can check with some coworkers who has an account in the EArray.

ADD REPLYlink written 7.2 years ago by JC9.3k
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They're not on eArray any more, I checked today. If you have an eArray login, that will work for SureDesign

ADD REPLYlink written 7.2 years ago by Daniel Swan13k

They are certainly still there, starting with version 4.0

ADD REPLYlink written 2.2 years ago by predeus1.3k
8
gravatar for Pierre Lindenbaum
7.1 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum125k wrote:

Ok https://earray.chem.agilent.com/suredesign/index.htm was the right place to find the BED. I was able to log-in today

Thank you all.

ADD COMMENTlink written 7.1 years ago by Pierre Lindenbaum125k
3

I can confirm that, 5 years later, this solution still works. I had to create an account at suredesign, then click "find designs", then click "agilent catalog", then you get to a list of a bunch of sureselect kits with download links including .bed files.

ADD REPLYlink written 2.3 years ago by glocke01170
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