Hi! Biostar readers
This is my first post to Biostar,
I have a VCF file containing variants, i want to convert to PLINK PED format.
I have tried using, vcftools --vcf *.vcf --plink
But when i input this file into WGAViewer it says "SNP and p value cannot be the same", Why?
Is there any other software to convert vcf to plink ped format?
could you post some lines of the output that you obtain with your vcftools command?