Problem With Autodock 4.2.5
0
0
Entering edit mode
11.4 years ago

Dear all,

Actually I need to go through docking simulation for my study. I'm trying using autodock 4.2.5. I already successful until stage autogrid to save DPF file. Ok. After I'm trying to run autogrid, I'm trying to click button "Run autogrid". Nothing happens and I'm get this message.

C:/ Program' is not recognized as an internal or external command, operable program or batch file.
Traceback (most recent call last):
File "C:\Autodock\MGLToolsPckgs\ViewerFramework\VF.py", line 898, in tryto
result = command( *args, **kw )
File "C:\Autodock\MGLToolsPckgs\AutoDockTools\autostartCommands.py", line 898, in doit
cmd = ("cd \"%s\" && "+cmd ) % wd
TypeError: cannot concatenate 'str' and 'list' objects
Exception in Tkinter callback
Traceback (most recent call last):
File "C:\Autodock\lib\lib-tk\Tkinter.py", line 1403, in __call__
return self.func(*args)
File "C:\Autodock\lib\lib-tk\Tkinter.py", line 498, in callit
func(*args)
File "C:\Autodock\MGLToolsPckgs\AutoDockTools\autostartCommands.py", line 958, in saveLog
if self.WinCmd.ok.configure()['state'][-1] == 'normal':
AttributeError: AutoGridStarter instance has no attribute 'WinCmd'

I'm being stuck in this stage almost 1 month. I hope someone can help me solve this problem. Because this is for my master project and I would like to publish a paper as soon as possible. I would appreciate if someone can help me. I can pay for money if you want. This is my email naimhairul@gmail.com.

Thanks a million

docking • 8.1k views
ADD COMMENT
0
Entering edit mode

Check your installation. It seems an installation problem with the paths..

ADD REPLY
0
Entering edit mode

Check the path to your default directory (File->Preferences). Make your current directory as your default directory. Just on a safe side, Put all your .exe files / input files / executed files in one folder to avoid any confusion or to generate any error. Hopefully, it will help.

ADD REPLY
0
Entering edit mode

Use ubuntu/linux. Simply install autodock and autogrid by sudo apt-get install autodock

ADD REPLY
0
Entering edit mode

Hi!

I have a problem with Autodock 4.2 exactly I have problem with run autogrid and run autodock where autogrid and autodock processes (calculation) not execute successfully. ERROR: can't find or open receptorPDBQT file "hsg1.pdbqt" and ERROR: Unsuccessful completion

As for run autodock

error : insufficient grid points
aborting

Please help me because I'm a beginner

ADD REPLY

Login before adding your answer.

Traffic: 1376 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6