I have recently downloaded Annovar, and succesfully filtered my files with a few databases, downloaded from Annovar. But when I try to do the exact same thing with the 1000 genomes project database, I get this error many times in the terminal, one for each line of **.
Argument "&" isn't numeric in numeric eq (==) at annotate_variation.pl line 1962, <DB> line &&.
& can be A, C, G, or T.
&& every line of the database
I have tried filtering with 1000g, 1000g2010 and 1000g2010jul databases, but all give these errors.
An example of the commands I use for filtering:
perl annotate_variation.pl --filter --dbtype CEU.sites.2010_07 testfile1.txt humandb/
Can anyone tell me if I'm doing something wrong, if this is known, and if I can do anything about it?