Question: How To Compute A Genetic Map For Snps
1
gravatar for Tim
5.9 years ago by
Tim10
Tim10 wrote:

Hello

I do want to use a program which requires a .map file like structure (Chromosome, SNP name, cM, Base pos). The problem is that I don't have the position in cM - is there any way to implement this information from existing genetic maps on the net?

plink snp • 4.6k views
ADD COMMENTlink modified 5.5 years ago by Biostar ♦♦ 20 • written 5.9 years ago by Tim10

related:

How to convert centimorgan to base pair

Compute genetic map

ADD REPLYlink modified 5.9 years ago • written 5.9 years ago by Pierre Lindenbaum116k

If you are using plink then you can leave CM column as 0.

http://pngu.mgh.harvard.edu/~purcell/plink/data.shtml

"Most analyses do not require a genetic map to be specified in any case; specifying a genetic (cM) map is most crucial for a set of analyses that look for shared segments between individuals. For basic association testing, the genetic distance column can be set at 0."

ADD REPLYlink written 5.9 years ago by zx87546.5k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1140 users visited in the last hour