Hi to all,
Where can I download all exons of the human genome in FASTA format (one big file!) ?
Thank you very much to all. Thank you Malachi, this is what I am looking for.
Not an answer... This should go as a comment. Thanks!
Here - ftp://ftp.ebi.ac.uk/pub/databases/astd/current_release/human/
Using Ensembl BioMART
The download took a while but eventually I got a file 'mart_export.txt.gz'. This file has output that looks like this
Thank you Malachi, this is what I am looking for :)
get the coordinates:
Exon coordinates of hg19 genome download
and fetch the sequences:
How to get the sequence of a genomic region from UCSC?
Batch fetching fasta sequences from bed file
Have a look at the UCSC Table Browser: position base query
The page does not work
If anyone is looking for the same but for GRCh37 here is the link.
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