Question: Where To Find Mirna Related Microarray Data For Leukemia Patients?
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gravatar for jlshi.nudt
7.3 years ago by
jlshi.nudt200
China
jlshi.nudt200 wrote:

I want to find as many as possible microarray data for miRNA. Is anyone familiar with this kind of data?

microarray mirna • 2.3k views
ADD COMMENTlink modified 6.4 years ago by zhxq09140 • written 7.3 years ago by jlshi.nudt200

did you checked GEO: http://www.ncbi.nlm.nih.gov/gds/?term=leukemia+mirna

ADD REPLYlink written 7.3 years ago by Rm8.0k

I've checked GEO, but I wander there maybe some special topics about miRNA expression genome-wide. Thank you.

ADD REPLYlink written 7.3 years ago by jlshi.nudt200
2
gravatar for ancient_learner
7.3 years ago by
India
ancient_learner630 wrote:

check this http://mimirna.centenary.org.au/mep/formulaire.html It contains the tissue specific expression profile data including various cancers.

ADD COMMENTlink written 7.3 years ago by ancient_learner630

Thank you, these data and tools are helpful.

ADD REPLYlink written 7.3 years ago by jlshi.nudt200
2
gravatar for ff.cc.cc
7.3 years ago by
ff.cc.cc1.3k
European Union
ff.cc.cc1.3k wrote:

HI, I suggest these:

-TCGA: https://tcga-data.nci.nih.gov/tcga/tcgaCancerDetails.jsp?diseaseType=LAML&diseaseName=Acute%20Myeloid%20Leukemia

-ArrayExpress: http://www.ebi.ac.uk/arrayexpress/

ADD COMMENTlink written 7.3 years ago by ff.cc.cc1.3k

Thank you, TCGA is very useful to me.

ADD REPLYlink written 7.3 years ago by jlshi.nudt200
0
gravatar for zhxq09
6.4 years ago by
zhxq09140
China
zhxq09140 wrote:

You can use starBase Pan-Cancer Analysis Platform . starBase Pan-Cancer Analysis Platform is designed for deciphering Pan-Cancer Networks of lncRNAs, miRNAs, ceRNAs and RNA-binding proteins (RBPs) by mining clinical and expression profiles of 14 cancer types (>6000 samples) from The Cancer Genome Atlas (TCGA) Data Portal (all data available without limitations).

starBase generated Pan-Cancer networks of CLIP-Seq experimentally supported miRNA-lncRNA and miRNA-mRNA interactions.

Pan-Cancer miRNA-mRNA interactions can be available at http://starbase.sysu.edu.cn/targetSite.php

ADD COMMENTlink written 6.4 years ago by zhxq09140
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