Question: How To Identify The 16S Rrna Gene Sequence In A Genome
0
gravatar for Ontheway
3.7 years ago by
Ontheway10
Ontheway10 wrote:

Hi, i have a question about the identification of 16S rRNA gene. One of the common methods is to resequence the 16S rRNA gene and the other is to search the database, such as greengenes. However, if i only have the genome sequence of a bacterial strain and i don't want to resequence the gene, how could i identify the 16S rRNA gene sequence of this strain quickly?

• 4.3k views
ADD COMMENTlink modified 3.7 years ago by cts1.4k • written 3.7 years ago by Ontheway10

"Only" have the genome sequence?!

ADD REPLYlink written 3.7 years ago by Neilfws46k
3
gravatar for cts
3.7 years ago by
cts1.4k
Pasadena
cts1.4k wrote:

Use RNAmmer either through their web server or by downloading the code and running it locally

ADD COMMENTlink written 3.7 years ago by cts1.4k
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