Question

Where Can I Find Some Agilent Sample Cel Files

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10.7 years ago

lahat.albert ▴ 60

I am working on a script to analyze affys and need to test/debug using various cel files, kinda got stuck trying to find agilent raw files .cel files.

Thank you.

affymetrix • 4.1k views

ADD COMMENT • link updated 10.7 years ago by Neilfws 49k • written 10.7 years ago by lahat.albert ▴ 60

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As mentioned by others Agilent has Featured extracted text file not CEL. Look in GEO for example: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL8852

ADD REPLY • link 10.7 years ago by Rm 8.3k

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I assumed "alignet" is supposed to be "agilent" and corrected it. Confusing that you then tag the post "affymetrix".

ADD REPLY • link 10.7 years ago by Neilfws 49k

score 3 · Answer 1 · 2013-08-28

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10.7 years ago

David Westergaard ★ 1.5k

CEL files are, to my knowledge, an Affymetrix ONLY format. Every CEL file I have ever worked with have come from Affymetrix platforms, whereas Agilent are always normal text files.

ADD COMMENT • link 10.7 years ago by David Westergaard ★ 1.5k

score 1 · Answer 2 · 2013-08-28

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10.7 years ago

Devon Ryan 104k

Just search GEO for "Agilent" and you'll find a very large number of published experiments, many of which have the .cel files included.

ADD COMMENT • link 10.7 years ago by Devon Ryan 104k