Question: Is Igv Software The Only Available Software To Open Bam File
0
gravatar for Tonyzeng
4.0 years ago by
Tonyzeng250
Tonyzeng250 wrote:

Just have a quick question here, Is IGV software the only available software to open BAM file?

bam • 1.3k views
ADD COMMENTlink modified 4.0 years ago by Bioch'Ti990 • written 4.0 years ago by Tonyzeng250
1

What do you mean by open? There are lots of ways to access and manipulate bam files. Samtools is one of the most popular, but there are also many language-specific libraries (for example RSamtools). Which approach is right for you largely depends on what you want to accomplish. Without that information, we're just guessing.

ADD REPLYlink modified 4.0 years ago • written 4.0 years ago by Chris Miller18k
4
gravatar for cts
4.0 years ago by
cts1.5k
Pasadena
cts1.5k wrote:

Certainly not, there is:

and more, those are just the ones i know off the top of my head. This is also a duplicate of Other Genomic Viewer Like Igv question on biostars

ADD COMMENTlink modified 4.0 years ago • written 4.0 years ago by cts1.5k
2
gravatar for Alex Reynolds
4.0 years ago by
Alex Reynolds21k
Seattle, WA USA
Alex Reynolds21k wrote:

NGS viewers reviewed covers clients, and it includes a "most resembles what video game" section for each viewer. Worth a read.

ADD COMMENTlink written 4.0 years ago by Alex Reynolds21k
1
gravatar for Ann
4.0 years ago by
Ann2.1k
Concord NC USA
Ann2.1k wrote:

You can use Integrated Genome Browser bioviz.org) to open, view, and share BAM files.

Free on-line webinar introducing IGB 8 starts in one hour (10/29 1 pm Eastern time US)

https://global.gotomeeting.com/meeting/join/739137717

ADD COMMENTlink modified 4.0 years ago • written 4.0 years ago by Ann2.1k
0
gravatar for Bioch'Ti
4.0 years ago by
Bioch'Ti990
France (Avignon)
Bioch'Ti990 wrote:

Hi, you can also check Consed here : http://www.phrap.org/consed/consed.html Have Fun

ADD COMMENTlink written 4.0 years ago by Bioch'Ti990
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1680 users visited in the last hour