How To Solve Gapfiller Error
1
1
Entering edit mode
8.7 years ago
HG ★ 1.2k

HI everyone, I am using GapFiller (http://www.baseclear.com/landingpages/basetools-a-wide-range-of-bioinformatics-solutions/gapfiller/) While running GapFiller getting an error message like this :

[bwa_index] Pack FASTA... [bns_fasta2bntseq] Failed to allocate 0 bytes at bntseq.c line 270: Success

Bwa error; 256 at GapFiller.pl line 218.

I have already check my fasta file there is no blank line or unusual character..

Can any one please suggest possible solution ..

Thank you.

bwa • 2.7k views
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2
Entering edit mode
6.9 years ago

Hey,

I know it has been a while since this has been posted, but today I ran into the same problem and found no solution on the internet until I discovered what was wrong with my fasta. In my case it was a simple space at the top of the file, with no header. Creating a header for the top line fixed it.

Best,
Pedro

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