Entering edit mode
10.9 years ago
alok.helix
▴
120
Hello guys,
After giving the following command I am facing error for the output file being generated. However formatdb was able to accept my FASTA file and I was successfully able to run my blastn on the terminal. Why is this happening?
./makeblastdb -in Consensus_for_BLAST.FASTA -dbtype nucl
Building a new DB, current time: 11/28/2013 17:49:06
New DB name: Consensus_for_BLAST.FASTA
New DB title: Consensus_for_BLAST.FASTA
Sequence type: Nucleotide
Keep Linkouts: T
Keep MBits: T
Maximum file size: 1000000000B
BLAST options error: Consensus_for_BLAST.FASTA does not match input format type, default input type is FASTA
please post what
head Consensus_for_BLAST.FASTA
shows..Thank you, for showing interest in this post, but luckily the error has been sorted!!!
I am getting the same error here
How did you sort it out?
Can you post your input file?
Thank you, for showing interest in this post, but luckily the error has been sorted!!!
It would be nice if you tell others what was the problem.