TB drug resistance pipeline
0
0
Entering edit mode
4 months ago
Moneeb Bajwa ▴ 10

Hello,

I am with a Public Health lab in USA. What would be a suitable program for finding drug resistance in TB that would be as precise as wet lab testing? I tried using CLC but it had contradictory results to our wet lab testing. Please assist. I would ideally like a command line tool that I can include into a WDL workflow. Thank you.

genomics workflow • 431 views
ADD COMMENT
0
Entering edit mode

The first link does not give >90% resistance detection for some drugs and the second link is outdated as the tool's website said it had to shutdown due to lack of funding.

ADD REPLY
1
Entering edit mode

What would be a suitable program for finding drug resistance in TB that would be as precise as wet lab testing?

Considering the nature of the work that you do, which is regulated at government level, should this not be opened up as a discussion among your colleague laboratories? Even if such a program existed, I would hope that it were extensively tested and ultimately approved by the CDC. Excuse me if this is just part of ongoing research. Irrespective, I am not aware of any program

ADD REPLY
1
Entering edit mode

Thank you. Yes this was just an exploratory question for potential future pipelines.

ADD REPLY

Login before adding your answer.

Traffic: 1123 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6