Hello, I have bed file, looking like this: (original is NCBi GTF file, converted to bed format)
I need to convert all delimiters to tabs in the given file for further usage with bedtools. I tried commands, according to this thread: https://stackoverflow.com/questions/1424126/replace-whitespaces-with-tabs-in-linux
However, after running bedtools, I get the following error
***** ERROR: illegal character 't' found in integer conversion of string "transcript". Exiting...
I cannot understand, why basic txt conversion commands dont work on this file. Also - is there a way to switch NC chromosomal code to chromosome number (i.e. NCXXX to 1)?