conversion of fasta file format to tabular format
0
0
Entering edit mode
2.0 years ago

Hi, I have my fasta file of RNA sequence which I wanted to identify motif via MEME web-based tool, however I had some issue with the sequence identifiers warned as too long during the file submission.

Therefore, I wanted to edit those sequence identifiers list after converting to tabular format to make it easier as I have to deal with more than 1000 identifiers.

Kindly share the command line used for conversion of the format.

Thank you.

fasta tabular • 724 views
ADD COMMENT
0
Entering edit mode
ADD REPLY
0
Entering edit mode
i wanted to edit those sequence identifiers list after converting to tabular format to make it easier as i have to deal with more than 1000 identifiers.

Post an example input and expected output.

ADD REPLY
0
Entering edit mode

Biopython SeqIO module has option to convert fasta to tabular format: https://biopython.org/wiki/SeqIO

ADD REPLY

Login before adding your answer.

Traffic: 2681 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6