Question

mapping paired end data

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20 months ago

upasana • 0

Hello folks,

Can I map paired end data individually with my reference genome to get separate .bam files?

paired-end bam bowtie mapping • 696 views

ADD COMMENT • link updated 13 months ago by Ram 43k • written 20 months ago by upasana • 0

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Yes. Just map each one individually (I would not recommend it but it's possible)

ADD REPLY • link 20 months ago by Asaf 10k

score 1 · Answer 1 · 2022-08-22

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20 months ago

swbarnes2 14k

Sure, but why not use the information from the one member of the pair to help map the other? You can map them together, then filter the bam to pull out the all the read1 reads.

ADD COMMENT • link 20 months ago by swbarnes2 14k

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okay.. got it.. thanks much:)

ADD REPLY • link 20 months ago by upasana • 0