What are the latest and greatest variant browsers?
2
1
Entering edit mode
20 months ago

Looking for user interfaces that allow either population level or individual browsing and searching of genomic variants. Both functionality and aesthetics count!

variants browser vcf • 616 views
ADD COMMENT
1
Entering edit mode
20 months ago

https://app.genebass.org/

Genebass is a resource of exome-based association statistics, made available to the public. The dataset encompasses 4,529 phenotypes with gene-based and single-variant testing across 394,841 individuals with exome sequence data from the UK Biobank. Genebass was developed by the following organizations which provided funding and guidance:

ADD COMMENT
1
Entering edit mode
20 months ago
GenoMax 142k

https://databrowser.researchallofus.org/genomic-variants

The Data Browser provides interactive views of the publicly-available All of Us Research Program participant data.

Genomic variants among other datatypes.


https://www.ncbi.nlm.nih.gov/variation/view

NCBI Variation viewer


https://popgen.uchicago.edu/ggv/?data=%221000genomes%22&chr=1&pos=222087833

Geography of genetic variants browser


https://www.ebi.ac.uk/eva/?Variant%20Browser

European variation archive


https://gnomad.broadinstitute.org/

gnomAD


https://pophuman.uab.cat/

Pophuman

ADD COMMENT

Login before adding your answer.

Traffic: 2748 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6