For some classes I need to find a simple reseach paper which can be reproduced by students. The paper basically should use RNAseq data to compare 2 (or whatever) conditions, find dif. expressed genes and perform GO term enrichments, so basically the standard pipeline - fastqc > trimmomatic > STAR > DEseq2 > clusterprofiler (or any popular derivitive of this pipeline). I was searching for quite some time but didn't find anything simple enough, so any suggestions would be greatly appreaciated.
Try and find data/tutorials that are used by cores to teach data analysis. These should be well whetted. Here is one example from Babraham in UK: https://www.bioinformatics.babraham.ac.uk/training.html#rnaseq