GATK GenotypeGVCFs explain
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15 months ago
Nobody ▴ 30

Hello,

Could you explain to me what GentypeGVCFs does and what it gives in output.

Thank you.

calling gatk variant GenotypeGVCFs • 1.7k views
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GenotypeGVCFs takes a set of GVCF files called with HaplotyperCaler and output a VCF file.

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what does the option L

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It limits the operation to some genomic regions given as parameter

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thank you

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thank you all !

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14 months ago
Zeng Jingyu ▴ 80

The official explaination of GenotyeGVCF is here (4.1.5.0), as the document said it has two types of working mode, for multiple samples and single sample.

I think the GATK document is sufficient for you to know about the function.

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