NCBI refseq ids to uniprot ids
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12 months ago
t.ali • 0

I have protein ids from refseq NCBI database. I want the corresponding uniprot ids through command line tool. Please help me to get the code. Thanks

refseq Uniprot • 713 views
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please, review all your previous questions and mark them answered if needed . (green tick on the left)

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12 months ago
GenoMax 143k

Since you asked for a command line solution, you can use UniProt API. Examples and help here: https://www.uniprot.org/help/id_mapping

Otherwise use the web based ID mapping tool: https://www.uniprot.org/id-mapping

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12 months ago
Jiyao Wang ▴ 370

You can also retrieve the mapping from the file gene_refseq_uniprotkb_collab.gz at the FTP site https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/.

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