biomaRt Ensembl version 83 (mouse)
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3 months ago

Hello,

I'm looking for an old Ensemb release (83) for GRCm38 build:

library(biomaRt)
mouse <- useEnsembl(biomart = "genes", dataset="mmusculus_gene_ensembl", version=83)

Error: Specified Ensembl version is not available.
Use listEnsemblArchives() to view available versions.

Version 83 is not displayed in the list of Ensembl archives ; is there another way to have access to this version?

Thank you!

Ensembl biomaRt • 300 views
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I don't think so, at least not through BioMart. Check this table to see which version of ensembl that is the closest that has the assembly you are looking for and use that: https://www.ensembl.org/info/website/archives/assembly.html

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Depends what you need. You can browse the archive directly at https://ftp.ensembl.org/pub/release-83/ so maybe what you need can be found there.

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