annotating single-cell clusters from gene lists
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7 weeks ago
Assa Yeroslaviz ★ 1.8k

We're working on a scRNA-Seq data set, which I now want to annotate. Based on previous projects we have a list annotation categories in a tabular format.

From the examples I have seen, I need to have another Seurat or a singleCellExperiment object (or even, if using the celldex package a SummarizedExperiment object.) But all I have is a list of genes per category in a text file.

I was wondering how I can use a text file as an input to annotate my Seurat object I'm working on?

thanks
Assa

annotation FindAllMarkers Seurat cell-type • 260 views
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