I have a huge gene list to characterize functionnaly and I am interested in KEGG pathway enrichment, I took a look at DAVID API and there are several inconvenience using it :
- Limitation in the number of queries by day (200 I think)
- API not evident to use, there is an R package but also it is not well clear how to use it
So I would like to know what do you recommend for KEGG pathway enrichement tools that could be used programmatically within an automation script.
My list of genes are in Ensembl Gene IDS