As the UCSC website showed us, the ENCODE project used chip-seq to find regulatory elements of human genome. Different type of antibody can combine to special element on DNA chain. I downloaded TFBS file containing the narrowPeak file and got coordinate of some elements. However, I could not get some more important elements directly, such as promoter, insulator, enhancer, silencer and LCR. There are some wig format files on UCSC, but those files just give tracks of those elements like the list below: http://genome.ucsc.edu/ENCODE/downloads.html
Regulation Super-track DNase Clusters Digital DNaseI Hypersensitivity Clusters from ENCODE Layered H3K27Ac H3K27Ac Mark (Often Found Near Active Regulatory Elements) on 7 cell lines from NCODE Layered H3K4Me1 H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE Layered H3K4Me3 H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE Transcription Transcription Levels Assayed by RNA-seq on 7 Cell Lines from ENCODE Txn Factor ChIP Transcription Factor ChIP-seq from ENCODE
How can I get coordinate of above regulatory elements? Thanks for your response!