How to print (show) all results in R screen

Question

[M K]

I using the following R function:

files <- list.files(pattern = "accepted_hits.bam")
aligns <- readGAlignmentsFromBam(files[1])
aligns

My question is how to print (show) all results in R screen or is there any way to send the full results to file like pdf.

Answer 1

[Devon Ryan]

Why do you want a PDF of the alignments? That wouldn't be useful for anything. If you want a text version of the alignments then just convert the BAM file to SAM with samtools.