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<prev • 16,346 results • page 1 of 545 • next >
2
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Isoform detection of a gene using RNAseq
isoform_detection rna-seq written 5 weeks ago by vinishavvenugopal • 0
0
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2
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0
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Normalization for WGCNA on two organisms (virus-host)
wgcna deseq2 rna-seq normalization written 8 minutes ago by robert.buecking • 0
6
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5
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5
answers
GO analysis- analyze upregulated and downregulated genes separately?
rna-seq written 5.5 years ago by ssukumaran • 20 • updated 58 minutes ago by dariober ♦ 11k
0
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27
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Job: Need Transcriptome bioinformatician's collaboration
next-gen job sequencing R alignment rna-seq written 1 hour ago by s.mojtabaghiasi • 0 • updated 1 hour ago by cpad0112 ♦ 15k
4
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2
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516
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7 follow
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Getting mitochondrial genes for scRNAseq
single-cell rna-seq scrnaseq written 7 months ago by m-harbus • 0 • updated 2 hours ago by charlesgwellem • 0
1
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1
answer
43
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1
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FASTQC: overrepresented sequences
rna-seq written 4 hours ago by kuilin • 0 • updated 3 hours ago by GenoMax ♦ 96k
0
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0
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39
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0
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get coordinates for a list of genes
gene rna-seq written 6 hours ago by robinycfang • 0 • updated 5 hours ago by zx8754 ♦ 10.0k
2
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4
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79
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4
answers
Tool: ClusterProfiler A software for functional enrichment of differentially expressed genes
software clusterprofiler rna-seq tool written 1 day ago by guoxuantong • 30 • updated 7 hours ago by louisewang222 • 0
1
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1
answer
80
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1
answer
PCA plotting using DESEq2 pipeline
rna-seq written 21 hours ago by aranyak111 • 0
0
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148
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Adding information tags with types, positions and counts of matches and mismatches in every read in the SAM file
rna-seq written 15 hours ago by lech.kaczmarczyk • 0
3
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1
answer
145
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1
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Gene expression heatmap following pseudotime analysis
rna-seq written 6 days ago by Vitis • 2.4k • updated 16 hours ago by rpolicastro ♦ 4.0k
0
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0
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62
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0
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ssGSEA analysis workflow and interpretation
rna-seq written 17 hours ago by salehm • 0
0
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1
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69
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1
answer
Confusion of the input format for DESeq2 and EdgeR for bulk- and scRNA-seq
scrna-seq deseq2 edger rna-seq written 18 hours ago by cwwong13 • 0
0
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66
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Getting normalized count/ gene expression matrix for both bulk and single-cell RNA-seq
scrna-seq deseq2 rna-seq edger written 18 hours ago by cwwong13 • 0
0
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60
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Should "dispersion" in edgeR be calculated for entire dataset or just conditions being analyzed?
rna-seq differential gene expression edger written 20 hours ago by O.rka • 240
0
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113
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0
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Trimming Ion Total RNA-seq Kit v2
ion torrent adapters trimming rna-seq written 4 weeks ago by mfawzy.sami • 80 • updated 21 hours ago by Biostar ♦♦ 20
0
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1
answer
48
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1
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DESeq2 for specific genes
R deseq2 specific genes rna-seq pathways written 22 hours ago by andreiareis1987 • 30 • updated 22 hours ago by swbarnes2 ♦ 9.6k
6
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65
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5 follow
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[RNA-seq] Extremely Unconsistent Raw Count from Different Tools; a dark mistery
alignment counts rna-seq written 1 day ago by ReWeeda • 90
121
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4
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20k
views
4
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Forum: Trimming adapter sequences - is it necessary?
ngs adapter forum rna-seq written 4.5 years ago by Lars • 780 • updated 1 day ago by hire.duck.design • 0
2
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38
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0
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Design and contrast matrices issues for including batch effect in RNA-seq analysis
R design contrasts rna-seq batch effect written 1 day ago by kris275 • 10
0
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40
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0
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AssertionError: not all umis are the same length(!): 4 - 5
umi umitools rna-seq written 1 day ago by monalisa6hota • 0 • updated 1 day ago by zx8754 ♦ 10.0k
0
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69
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best transformation for large RNAseq dataset
normalization transformation deseq2 rna-seq vst written 1 day ago by loipf • 0
0
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0
answers
44
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0
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get counts by gene for single cell rna seq
single cell rna seq rna-seq tool written 1 day ago by das2000sidd • 30 • updated 1 day ago by ATpoint ♦ 46k
3
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3
answers
2.3k
views
3
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Optimizing De Novo Transcriptome assemblies for non model organisms
assembly rna-seq written 6.0 years ago by giorgiocasaburi • 90 • updated 1 day ago by Biostar ♦♦ 20
0
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1
answer
81
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1
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MultiQC real threshold in every parameter
quality control multiqc rna-seq fastqc written 1 day ago by jimmy0958073736 • 0 • updated 1 day ago by GenoMax ♦ 96k
0
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74
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Seurat obj conversion to Anndata not accurately creating var in a h5ad file
anndata R rna-seq seurat written 1 day ago by akh22 • 50
0
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1
answer
207
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1
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I need to create a box plot for RPKM normalised data, can anyone please help me to make me understand, how to create a box plot for this given data
R rna-seq written 1 day ago by rishav513 • 0
0
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36
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How to save DEXSeq result to a .csv file ?
R rna-seq written 1 day ago by Aynur • 40
0
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85
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Job: Job Posting - Computational Biologist at UTSW
next-gen chip-seq job rna-seq written 1 day ago by Laura.banaszynski • 0
0
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46
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0
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How to get coverage for specific base(s), and for specific mismatch(es) per genomic range
rna-seq written 1 day ago by lech.kaczmarczyk • 0
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