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which is better for rna-seq analysis? R or python?
R rna-seq python written 20 minutes ago by amirnavidinia2014 • 0
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Directionality of GSEA result Vs log2FC
rna-seq written 1 hour ago by amitkrj2002 • 0
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6 follow
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principal component analysis (PCA) of single cell samples which come from different libraries
rna-seq written 1 day ago by yueli7 • 140 • updated 14 hours ago by ATpoint ♦ 34k
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Using awk to filter .gtf by FPKM
assembly rna-seq written 1 day ago by ellenbdrake30 • 0
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60
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DEXSeq aggregates two different genes together
dexseq rna-seq written 2 days ago by rohitsatyam102 • 90 • updated 1 day ago by Kevin Blighe ♦ 59k
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spike-in Single cell RNA-seq
R rna-seq sequencing written 1 day ago by mikysyc2016 • 70
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72
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Heatmap with just two columns
rna-seq heatmap written 1 day ago by Mozart • 190
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61
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Microarray data correlation plot between highly expressed genes
R chip-seq rna-seq python written 1 day ago by asmitabioinfo2203 • 0
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Can EdgeR of DeSeq be used for Single-cell RNA-seq?
rna-seq written 6.1 years ago by neja • 40 • updated 2 days ago by ATpoint ♦ 34k
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HISAT2 alignment problem
rna-seq hisat2 written 25 days ago by kwanghoon • 0 • updated 2 days ago by geneticatt • 0
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Removing Unknown Batch Effects and Latent Confounders in Splicing PSI Data
sva differential expression splicing rna-seq limma written 2 days ago by eggerj • 0 • updated 2 days ago by geek_y ♦ 11k
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40
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DEXSeq gives most of the reads as "_empty"
dexseq software error next-gen alignment rna-seq written 2 days ago by rohitsatyam102 • 90
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Running scVelo on Seurat
singlecell velocity rna-seq seurat written 2 days ago by V • 220
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60
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How to distinguish between insertion and assembly error in transcripts?
assembly sequence rna-seq written 2 days ago by wxh81 • 10 • updated 2 days ago by lieven.sterck ♦ 7.8k
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Drop values in expression dataset python
geo python geoparse rna-seq written 4 days ago by highfillchad • 0 • updated 2 days ago by zorbax • 100
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How to generate a dataframe of deseq2 result excluding 'low counts' and 'outliers' ?
deseq2 rna-seq written 3 days ago by tianshenbio • 40 • updated 2 days ago by Kevin Blighe ♦ 59k
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Help for OmicsBox - Blast2GO
rna-seq written 2 days ago by dimitrischat • 110
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40
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Robust likelihood-based modeling with data partitions
coxph rbsurv prognostic genes rna-seq written 2 days ago by luisa-bisceglia • 0
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How can I filter RNA-seq reads to remove reads where more than 50% of the read is low quality (Q<20)?
genome quality rna-seq filtering written 2 days ago by mar77 • 0
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45
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Get data from SRA with just SAMN IDs
ncbi sra fastq rna-seq written 2 days ago by mark.dunning • 210
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DREME [MEME-suite] run locally results in empty output
dreme dna rna-seq motifs written 2 days ago by ktm • 0
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Calling Exon Skipping Events from RNA-Seq
fusion star rna-seq written 4 days ago by mrxcm3 • 40 • updated 2 days ago by gianluca.dellavedova • 50
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How do I use quantile normalized data to do differential expression analysis in RStudio?
gene R rna-seq written 3 days ago by maricastanon • 0 • updated 2 days ago by zx8754 ♦ 9.2k
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149
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cuffdiff output table
assembly next-gen rna-seq R written 3 months ago by Balatheskulter • 0 • updated 3 days ago by Biostar ♦♦ 20
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70
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Is it possible to get the results after TMM normalization in edgeR?
R rna-seq written 3 days ago by statmushroom • 0 • updated 3 days ago by Kevin Blighe ♦ 59k
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small RNA Workflow
bioinformatics smallrna rna-seq mirna written 3 days ago by VineethVenumadhavan • 30
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WGCNA and SC-RNA Seq data
sc-rna seq rna-seq wgcna written 4 days ago by pennakiza • 50
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71
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Generating A Heatmap for specific samples.
deseq2 rna-seq heatmap written 4 days ago by fouerghi20 • 0 • updated 3 days ago by dtm2451 • 20
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472
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2
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Differential analysis heatmap without hclust
R heatmap hclust rna-seq complexheatmap written 11 months ago by newbie • 70 • updated 3 days ago by dtm2451 • 20
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DESeq2 for pairwise comparison of multiple groups
R deseq2 rna-seq written 3 days ago by thjnant • 100
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