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2
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2
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52
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2
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Using featureCounts on paired-end reads aligned with HISAT2 resulting in 0 assigned fragments
gene assembly alignment rna-seq written 10 hours ago by turo.1 • 10 • updated 4 hours ago by h.mon ♦ 31k
0
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0
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34
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0
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Good bowtie2 alignment rate and low mapping on transrate ...
software error assembly rna-seq written 8 hours ago by doinelpierrot • 0 • updated 5 hours ago by Istvan Albert ♦♦ 85k
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1
answer
25
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1
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Lost Raw Reads: RNA-Seq Data
rna-seq written 6 hours ago by Tyler.Akonom • 0 • updated 5 hours ago by Istvan Albert ♦♦ 85k
0
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1
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21
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1
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Am i required to use S4 objects as input for singscore
R rna-seq written 6 hours ago by Lemon • 0 • updated 6 hours ago by jared.andrews07 ♦ 7.3k
1
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1
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40
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1
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About gene expression data in FPKM stored in public databases
rna-seq written 12 hours ago by gspirito • 10 • updated 6 hours ago by Istvan Albert ♦♦ 85k
3
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1
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114
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1
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How to deal with high duplication rate in FASTQC ( de novo transcriptom assembly) ?
assembly rna-seq written 13 days ago by doinelpierrot • 0
1
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0
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31
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0
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Estimating Transcript Abundance with RSEM
rna-seq written 10 hours ago by wes • 20 • updated 10 hours ago by i.sudbery ♦ 9.3k
0
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0
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41
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0
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gene network analysis
R network tutorial rna-seq written 12 hours ago by adR • 40 • updated 12 hours ago by Kevin Blighe ♦ 66k
2
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1
answer
68
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1
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How to make a connection b/w behavioral data Vs. gene expression data ?
rna-seq written 16 hours ago by sunnykevin97 • 140 • updated 13 hours ago by Kevin Blighe ♦ 66k
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1
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45
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1
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About alignment rate of Dendrobium officinale (a plant) used RSEM software
alignment rna-seq rsem written 23 hours ago by wensulin93 • 0 • updated 14 hours ago by Rogerio Ribeiro • 30
1
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0
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30
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0
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How to use fastq subreads PacBio reference free for analysis
reference free pacbio subreads rna-seq written 17 hours ago by sam891 • 10
4
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1
answer
66
views
1
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PC1 vs PC2 in separating healthy vs disease
pca rna-seq written 18 hours ago by asumani • 60
3
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0
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83
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0
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How to extract reads with exact match with BBDuk?
fastq bbduk rna-seq written 6 days ago by camelest • 10
16
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2
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815
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8 follow
2
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How to separate lncRNA and mRNA from RNA-Seq data for differential expression?
rna-seq written 20 months ago by anilbioinfo1995 • 0 • updated 1 day ago by Kevin Blighe ♦ 66k
0
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1
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48
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1
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Choosing Hub genes inside a module (WCGNA - COEX NETWORK)
rna-seq wcgna written 1 day ago by ovariohisterectomia • 20 • updated 1 day ago by Kevin Blighe ♦ 66k
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0
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42
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0
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Defining groups in Geo2R
bacteria geo2r rna-seq written 1 day ago by ssaron • 0
1
vote
1
answer
69
views
1
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TCR analysis in Suerat
10x R tcr rna-seq seurat written 1 day ago by robertl • 0 • updated 1 day ago by jared.andrews07 ♦ 7.3k
0
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0
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45
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0
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Efficiently obtaining genomic transcript levels of thousands of patient samples by cancer types
rna-seq cancer written 1 day ago by theodore.killian • 10
4
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0
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81
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5 follow
0
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RNAseq example data
data next-gen rna-seq expression written 1 day ago by rakinitopo • 10 • updated 1 day ago by ATpoint ♦ 39k
3
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1
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88
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1
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why different transcripts of same gene show up and down regulation in control vs treatment?
rna-seq written 1 day ago by Abhishek • 20 • updated 1 day ago by i.sudbery ♦ 9.3k
1
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1
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977
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1
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RNA seq result interpretation
next-gen rna-seq written 2.8 years ago by reena_gd • 0 • updated 1 day ago by Abhishek • 20
5
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1
answer
104
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1
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PCA plot, less points than samples
rna-seq written 2 days ago by eridanus • 0
0
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0
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65
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0
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How to avoid overfitting using SVA?
sva rna-seq overfitting written 7 days ago by Sam • 30
0
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0
answers
49
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0
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Tool: Extend 3' UTR of a GTF file
gtf annotation tool rna-seq python written 1 day ago by Shred • 190
0
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1
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1.7k
views
1
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segmentation for RNAseq dataset from fruitfly
expression_value rna-seq segmentation coverage written 5.3 years ago by ha.sr.skr • 0 • updated 2 days ago by Biostar ♦♦ 20
1
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0
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687
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5 follow
0
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Clarity for proper design model matrix with paired sample analysis
R design limma rna-seq statistics written 17 months ago by reskejak • 30 • updated 2 days ago by starick.marick • 0
3
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1
answer
59
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1
answer
correlation matrix for HTSeq data
rna-seq written 2 days ago by rhasanvandj • 0
0
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1
answer
113
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5 follow
1
answer
Alignng RNAseq data for gene prediction
gene prediction rna-seq written 3 days ago by karthic • 100 • updated 2 days ago by liorglic • 330
2
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1
answer
66
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1
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Which reference genome file is correct?
genome assembly alignment rna-seq written 2 days ago by theodore.killian • 10 • updated 2 days ago by genomax ♦ 90k
4
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1
answer
114
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5 follow
1
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EdgeR analysis with CPM normalzed counts
rna-seq written 3 days ago by silas008 • 130 • updated 2 days ago by ATpoint ♦ 39k
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