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News: Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
news next-gen biomedical genomics rna-seq written 6 hours ago by AABI • 120
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Simulating RNA Editing
rna editing simulation rna-seq sequencing written 10 hours ago by sagicoh1003 • 0
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How can I change the fold change based on count per million value to 4?
rna-seq written 9 weeks ago by Keyouer • 0
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Exome versus RNA sequencing
assembly chip-seq rna-seq written 3.2 years ago by Abdul Rafay Khan • 1.1k • updated 14 hours ago by Biostar ♦♦ 20
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no matrix.mtx.gz in cellranger output
rna-seq written 17 hours ago by yueli7 • 110
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What are some references of works that use a TPM expression threshold for filtering samples/genes?
rna-seq written 1 day ago by mike-zx • 160
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How to determine the list of all genes (at least expressed once in RNA Seq Experiment)
rna-seq written 1 day ago by adebayo.aig • 0
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Using RPKM data of RNA-seq for Hierarchical clustering
rna-seq written 4.6 years ago by simonhb1990 • 20 • updated 1 day ago by Biostar ♦♦ 20
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How to plot a heat map by giving scaling the color for row-wise?
R rna-seq written 1 day ago by Wox • 300
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Visualize paired end reads
paired-end alignment rna-seq written 2 days ago by Chirag Nepal • 2.2k
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Trimming didnt work
rna-seq written 2 days ago by Kiki_01 • 0 • updated 2 days ago by genomax ♦ 78k
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Options for cell type deconvolution from whole blood?
rna-seq written 6 months ago by penny.lane • 10 • updated 2 days ago by E.Earley • 20
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Trinity transcript_abundance.pl error using RSEM
assembly rna-seq written 2 days ago by dimitrischat • 100
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RNA-seq find marker genes
marker gene biomarker rna-seq written 2 days ago by massimo.larosa • 0
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DRIMSeq problems with dmPrecision
software error R rna-seq sequencing written 2 days ago by poecile.pal • 0 • updated 2 days ago by kristoffer.vittingseerup • 3.0k
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about the batch effects
rna-seq written 9 weeks ago by Bogdan • 920 • updated 3 days ago by swbarnes2 ♦ 7.4k
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Compact visualisation of enrichment analysis
revigo panther gene ontology david rna-seq written 3 days ago by Arindam Ghosh • 200 • updated 3 days ago by grant.hovhannisyan • 1.9k
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How to perform normalization and calculate when there are multiple groups ?
anova rna-seq normalization written 3 days ago by Karma • 270
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Make a GFF-file compatible for reference database
ensembl gff mysql rna-seq gene-counter written 5 days ago by viktoria.c.karlsson • 0
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In need of guidance: RNA-seq analysis
R rna rna-seq written 3 days ago by jonathanU • 10 • updated 3 days ago by Barry Digby • 290
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The rate of "aligned concordantly exactly 1 time" in Hisat2
alignment rna-seq written 3 days ago by f86222 • 0
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How to generate sequence length distribution from Fasta file
fatsa rna-seq srna-seq written 3 days ago by 2822462298 • 30
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miRDeep2 stops at 'excising precursors' step..
software error novel rna-seq mirna written 3 days ago by Vignesh • 0
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How to analyze this kind format of 10x single cell RNA-seq data?
10x single-cell rna-seq assembly written 3 days ago by zhoujie • 0 • updated 3 days ago by arup ♦ 2.1k
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Job: Machine/Deep Learning Research Scientist at UNC Charlotte, NC, USA
statistics python machine learning job R rna-seq written 3 months ago by bigmawen • 340
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Job: Bioinformatics Scientist/Programmer, Clinical Cancer Genomics Laboratory at UCSF
next-gen job snp sequencing R rna-seq written 5 weeks ago by ccglucsf • 20
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How to label custom multiple gene lists object into volcano plot?
gene R rna-seq written 4 days ago by choijamtsm • 0 • updated 4 days ago by RamRS ♦ 25k
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issue for doing an small rna seq analyzing
rna-seq written 6 weeks ago by sabaghianamir70 • 10 • updated 4 days ago by Biostar ♦♦ 20
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Can fusion transcript softwares distinguish between gene-fusions and transcript-fusions?
fusion rna-seq written 4 days ago by c_u • 170
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How to remove lines/headers from a SAM file after combined from different lanes
genome R chip-seq rna-seq written 4 days ago by mudithekanayake • 0
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