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Hi Brian, Thank you and apologies for the extra future revision works. Out of curiosity we disabled neural networks 'nn=f' and the file o…
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chrisk
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Hi Genomax, This is the thread: https://www.biostars.org/p/9582467/ Cheers, Chris
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that's helpful, thanks :)
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Ah, this is a little embarrassing; those are the vectors for the neural network. I overloaded a field that was being used for the insert s…
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Thanks - I corrected it. It doesn't seem to annotate. I converted to binary after which is what is shown below. It is not the output I want…
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Arton
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These are valid questions. Does your code address the concerns you've raised? From what I understand, FilterVcf is primarily designed for h…
Answer: Calculate allelic frequency from VEP output vcf file
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ramiro.barrantes
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Found the answer here!! https://github.com/Illumina/strelka/blob/master/docs/userGuide/README.md#somatic Although this leads to a str…
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That's not a valid reason to delete the post. If that information was sensitive, posting it here was a mistake in the first place. I don't …
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Hi, regardless of how you generated the data whether with DESeq2 or other pipeline, your differential expression matrix can be used as inpu…
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> Do you think my commands were correct? I'm not familiar enough with this bcftools syntax. but what if there is no AD, what if both…
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I know this was asked several years ago, but finding this post helped me solve my own problem and in the process I solved this one too. …
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Would Parkinson's be expected to have an effect on blood cells? Neurons, sure, but blood cells?
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Thank you very much, you've helped me a lot. Could you suggest a book or article that offers a complete explanation of these processes?
Comment: Filtering VCF files based on VAF giving incorrect results
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Arton
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Thank you. I can't try a completely new tool but I will keep your command for future use. Do you think my commands were correct? For exampl…
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Ghada
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Thanks. Thats work
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