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4
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173
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0
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Error when running Ensembl VEP: "bigWigToWig does not seem to be in your path"
ensembl ngs vep snp bigwig written 5 weeks ago by claudiadast • 0 • updated 3 days ago by Biostar ♦♦ 20
2
votes
1
answer
124
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5 follow
1
answer
Ensembl ID conversion - other than Uniprot
ensembl uniprot rna-seq id conversion written 7 days ago by NS • 0 • updated 6 days ago by Alex Reynolds ♦ 26k
2
votes
1
answer
144
views
1
answer
HUGO and Ensembl ids
ensembl hugo rna-seq single cell written 4 weeks ago by rsafavi • 40 • updated 8 days ago by EagleEye ♦ 5.9k
13
votes
2
answers
188
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7 follow
2
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Implement ensembl gene annotation pipeline for my assembly
gene annotation ensembl written 10 days ago by Mbillah • 100 • updated 9 days ago by WouterDeCoster ♦ 34k
2
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0
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103
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0
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Job: Ensembl Regulation Project Leader, Cambridge, UK
ensembl gene expression epigenomics job written 14 days ago by Emily_Ensembl ♦ 16k • updated 14 days ago by genomax ♦ 58k
3
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0
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200
views
0
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Job: Job: Ensembl Bioinformatician - comparative genomics
alignments ensembl homology job gene tree written 14 days ago by Emily_Ensembl ♦ 16k
1
vote
1
answer
92
views
1
answer
Ensembl Data Slicer
data slicer ensembl 1000 genomes populations written 16 days ago by genomics Newbie • 10 • updated 16 days ago by Emily_Ensembl ♦ 16k
3
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0
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184
views
5 follow
0
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Is the Ensembl.org website down today 11/3/2018
gff3 ensembl written 17 days ago by paulranum11 • 30 • updated 17 days ago by finswimmer ♦ 7.0k
4
votes
2
answers
197
views
2
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Finding exons and introns sequences
genome ensembl sequence exon intron written 26 days ago by elisheva • 70 • updated 19 days ago by vkkodali • 450
1
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0
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115
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0
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Help downloading gene descriptions using Ensembl biomart fungi portal
ensembl biomart fungi written 28 days ago by Vijay Lakhujani ♦ 3.2k
10
votes
2
answers
224
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2
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Querying VEP using REST API
rest ensembl vep python R written 28 days ago by Arko • 10 • updated 28 days ago by Emily_Ensembl ♦ 16k
5
votes
1
answer
252
views
1
answer
HISAT2 Indexing using annotation for Rattus_norvegicus
hisat2 annotation alignment ensembl index written 4 weeks ago by neranjan • 0
1
vote
1
answer
113
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1
answer
HTTP 400 error for select SNPs when using Ensembl Linkage Disequilibrium calculator
ensembl snp ld written 29 days ago by Scott • 70 • updated 29 days ago by Emily_Ensembl ♦ 16k
5
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1
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1.1k
views
1
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Retrieving GO terms from ensembl bacteria
rest ensembl go terms gene ontology api written 22 months ago by Diego • 40 • updated 4 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
161
views
1
answer
Gene IDs turn into mutiple Ensembl IDs?
genome python ensembl written 4 weeks ago by iannos • 0
0
votes
1
answer
104
views
1
answer
MiRbase context IDs
mirbase ensembl id context rna-seq written 4 weeks ago by GiusiG • 0 • updated 4 weeks ago by Emily_Ensembl ♦ 16k
2
votes
1
answer
131
views
1
answer
Deprecated identifiers in Ensembl?
orthologs ensembl annotation written 4 weeks ago by Solowars • 40 • updated 4 weeks ago by Emily_Ensembl ♦ 16k
2
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1
answer
1.2k
views
1
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doubts about genome assembly and ensembl
genome browser ucsc ensembl snp assembly written 3.9 years ago by palliyath91 • 0 • updated 5 weeks ago by Biostar ♦♦ 20
5
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1
answer
350
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6 follow
1
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VEP- What is the best idea to start analyzing?
ensembl vep snp written 5 weeks ago by mostafarafiepour • 60 • updated 5 weeks ago by sadri.amirhossein • 0
0
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1
answer
170
views
1
answer
Filtering SNPs by protein
ensembl biomart snp written 5 weeks ago by jonas • 0 • updated 5 weeks ago by Emily_Ensembl ♦ 16k
7
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0
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125
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0
answers
Blog: Ensembl and NCBI MANE transcript initiative
ncbi gene annotation canonical blog ensembl transcript written 5 weeks ago by Emily_Ensembl ♦ 16k
0
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0
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90
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0
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PDB ids and Ensembl ID for gene sequence
gene pdb ensembl written 6 weeks ago by kingkenshin1997 • 0 • updated 6 weeks ago by Emily_Ensembl ♦ 16k
2
votes
2
answers
132
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2
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Want to download the proximal promoter region of my favorite gene from every species in Ensembl
ensembl biomart sequence automation written 6 weeks ago by TEF • 0 • updated 6 weeks ago by Emily_Ensembl ♦ 16k
1
vote
0
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103
views
0
answers
D. melanogaster transposable elements in Ensembl/Flybase annotations
ensembl transposon annotation written 6 weeks ago by Botond Sipos • 1.7k
1
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1
answer
117
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1
answer
Ensembl bacterial genome alignment - use top level or chromosome?
ensembl alignment chip-seq bacteria chromosome written 6 weeks ago by Boboboe • 10 • updated 6 weeks ago by Emily_Ensembl ♦ 16k
1
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1
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140
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1
answer
Conservation between mouse and human genes: form ensembl gene id?
ensembl gene conservation written 8 weeks ago by piyushjo • 70
9
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2
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236
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2
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ENSEMBL annotation file for quantification: which file to use?
ensembl rna-seq annotation written 8 weeks ago by psm • 20 • updated 8 weeks ago by Ben_Ensembl • 760
1
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0
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278
views
0
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Converting Ensembl gene id/gene id version to hgnc symbol using Biomart r package
R tcga gene id ensembl written 8 weeks ago by sahar850 • 0 • updated 8 weeks ago by RamRS ♦ 19k
4
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1
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1.3k
views
1
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NCBI dbSNP compatibility w/ Ensembl whole genome
ncbi gatk ensembl written 2.8 years ago by umn_bist • 320 • updated 8 weeks ago by RamRS ♦ 19k
1
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1
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949
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1
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Batch query of ancestral and derived alleles from Ensemble
ancestral allele ensembl snp batch written 2.8 years ago by Mr Locuace • 80 • updated 8 weeks ago by linnaean • 0
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