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How to filter Ensembl cDNA and ncRNA FASTA files by primary assembly?
ensembl written 3 days ago by michael.mccarthy.404 • 0
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3
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172
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5 follow
3
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Forum: Survey: help define Gencode and NCBI primary transcripts
ncbi refseq forum gencode ensembl transcript written 10 days ago by Emily_Ensembl ♦ 14k
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87
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Fungi genomes: which database should I use?
genome ensembl jgi fungi blast written 5 days ago by tlorin • 230
135
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3
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63k
views
80 follow
3
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Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
tool genome conversion coordinates ensembl liftover written 5.1 years ago by Malachi Griffith ♦ 16k
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1
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113
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1
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How to find the gene chromosome in the mysql table of Ensembl Database
genome ensembl mysql written 21 days ago by xidianbill • 10 • updated 21 days ago by Pierre Lindenbaum ♦ 106k
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124
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ENSEMBL VEP Inconsistent Results
ensembl vep written 23 days ago by azmanr • 0
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1
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163
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5 follow
1
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What is agi and bgi in the Ensembl gtf file
agi gtf bgi rna-seq ensembl written 27 days ago by Vijay Lakhujani • 1.9k • updated 25 days ago by Emily_Ensembl ♦ 14k
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1
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170
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1
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News: Ensembl Perl API course, April 2018
news course training perl ensembl api written 3 months ago by Emily_Ensembl ♦ 14k
5
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1
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102
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1
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choice of human genome before RNASeq mapping
human genome ensembl rnaseq mapping written 29 days ago by archie • 40 • updated 29 days ago by grant.hovhannisyan • 730
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110
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Some symbols share the same ensembl ID in org.Hs.eg.db but not in ensembl website, how to deal with it?
org.hs.eg.db gene symbol ensembl written 4 weeks ago by Timze W • 10
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74
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Cuffdiff genes.fpkm_tracking xloc IDs to Ensembl IDs
genes.fpkm_tracking ensembl cuffdiff xloc written 4 weeks ago by bryce.kirby • 0
5
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2
answers
192
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2
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VEP tools output
ensembl vep output written 7 weeks ago by Nandini • 540 • updated 6 weeks ago by Ben_Ensembl • 600
5
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3
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184
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3
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Mapping Ensembl Gene IDs with dot suffix
gene ensembl biomart bioconductor written 6 weeks ago by mattkarikomi • 10 • updated 6 weeks ago by Mike Smith • 580
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2
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167
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2
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Help exploring unknown region
gene ensembl forum databases function prediction written 7 weeks ago by gpng • 0 • updated 7 weeks ago by Emily_Ensembl ♦ 14k
2
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1
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178
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1
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Finding zebrafish promoters ENSEMBL
ensembl promoter written 7 weeks ago by Seigfried • 40 • updated 7 weeks ago by Ben_Ensembl • 600
3
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0
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176
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0
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TSS coordinates from Ensembl Biomart
ensembl biomart written 11 weeks ago by ZheFrench • 120 • updated 7 weeks ago by Biostar ♦♦ 20
1
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1
answer
130
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1
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How to get Transcription End site (TES) via ensembl biomart ?
ensembl biomart written 8 weeks ago by ZheFrench • 120 • updated 8 weeks ago by Ben_Ensembl • 600
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1
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177
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1
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Biomart error: Does anyone know how to solve this error?
genome R biomart ensembl written 9 weeks ago by star • 50 • updated 9 weeks ago by Denise - Open Targets • 4.4k
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230
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News: Bioinformatics in Google Summer of Code 2018
ensembl news gsoc written 9 weeks ago by Emily_Ensembl ♦ 14k
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1
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254
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1
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Homo_sapiens.GRCh38.91.chr.gtf.gz or Homo_sapiens.GRCh38.91.gtf.gz for differential expression of RNA-seq data?
genome ensembl rna-seq annotation written 10 weeks ago by amina.mcdiarmid • 0 • updated 10 weeks ago by Devon Ryan ♦ 78k
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207
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Counting the number of paralogues for mouse genes gives me the wrong frequency
R biomart bioinformatics ensembl written 12 weeks ago by up728920 • 0
3
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1
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2.3k
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1
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Creation Of Exoncountset In Dexseq
ensembl exon written 4.8 years ago by alittleboy • 210 • updated 12 weeks ago by Biostar ♦♦ 20
4
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1
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208
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1
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How to obtain genes realtions in R?
gene R ensembl written 12 weeks ago by mateuskania • 10 • updated 12 weeks ago by Jean-Karim Heriche ♦ 15k
3
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2
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162
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2
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ENST with a period-- significance?
ensembl rna-seq written 3 months ago by jamesdalg • 0 • updated 3 months ago by Erin_Ensembl • 20
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1
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311
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1
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Bulk download introns, exons, and UTR regions from Ensembl for gene prediction training set
annotation sequence intron exon ensembl written 3 months ago by Katherine Huang • 0 • updated 3 months ago by Brian Gudenas • 90
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6
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12 follow
6
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Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates
genome ensembl coordinates mapping ucsc written 6.4 years ago by Ryan D • 3.2k • updated 3 months ago by ericrkofman • 0
4
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1
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319
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1
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Interpretation of transcripts with retained intron
ensembl rna-seq written 5 months ago by mforde84 • 1.1k • updated 3 months ago by Biostar ♦♦ 20
2
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2
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257
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2
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Using UCSC Genome Browser with results from NCBI or Ensembl assemblies
ncbi ensembl ucsc browser written 3 months ago by colin.kern • 150 • updated 3 months ago by Emily_Ensembl ♦ 14k
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1
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229
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1
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Ensembl REST API structural variants
ensembl api written 3 months ago by gpng • 0 • updated 3 months ago by Emily_Ensembl ♦ 14k
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2
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3.0k
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2
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Conversion tool from ENST(ensembl) transcript to NM transcript(NCBI)
ncbi ensembl transcript conversion written 23 months ago by gmora • 10 • updated 4 months ago by Biostar ♦♦ 20
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