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<prev • 606 results • page 1 of 21 • next >
2
votes
2
answers
83
views
2
answers
BigWig from ensembl assembly to UCSC session
ensembl bigwig ucsc written 14 hours ago by Dataminer • 2.5k • updated 13 hours ago by Devon Ryan ♦ 81k
1
vote
1
answer
890
views
1
answer
Retrieve upstream non-coding sequenses of genes from Ensembl or phytozome
gene ensembl phytozyme written 3.2 years ago by F • 3.0k • updated 1 day ago by zx8754 ♦ 4.5k
0
votes
0
answers
80
views
0
answers
Unknown Stringtie IDs produced when using Ensembl GTF
gtf ensembl stringtie rna-seq written 3 days ago by freuv • 10 • updated 2 days ago by Emily_Ensembl ♦ 15k
6
votes
1
answer
78
views
1
answer
Ensembl: Genes versus Transcripts
gene annotation ensembl written 2 days ago by nathaniel.schleif • 0 • updated 2 days ago by finswimmer ♦ 2.8k
3
votes
3
answers
188
views
5 follow
3
answers
Fasta file and GTF file for STAR alignment
ensembl star written 22 days ago by snp87 • 30 • updated 16 days ago by swbarnes2 ♦ 3.6k
3
votes
1
answer
108
views
1
answer
Ensembl API: How to get sequences by Gene ID for older Ensembl version?
ensembl api older version written 17 days ago by bi_Scholar • 0 • updated 16 days ago by Emily_Ensembl ♦ 15k
1
vote
1
answer
167
views
1
answer
COSMIC to Ensembl mapping
assembly next-gen cosmic ensembl written 22 days ago by banerjeeshayantan • 50 • updated 21 days ago by Emily_Ensembl ♦ 15k
0
votes
0
answers
70
views
0
answers
Combining DNA methylation scores from ensembl
ensembl dnamethylation written 23 days ago by I.hemel • 0
2
votes
1
answer
128
views
1
answer
Update RefSeq database with Ensembl VEP
ensembl vep refseq written 25 days ago by rbagnall • 1.2k • updated 24 days ago by Emily_Ensembl ♦ 15k
1
vote
1
answer
137
views
1
answer
JBrowse (and Tablet) only show Ensembl transcripts/can't search by gene ID or symbol
ensembl jbrowse tablet written 4 weeks ago by mamillerpa • 20
1
vote
0
answers
178
views
0
answers
Fungi genomes: which database should I use?
genome ensembl jgi fungi blast written 9 weeks ago by tlorin • 240 • updated 4 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
125
views
1
answer
Ensembl rest getting exon only Sequence.
ensembl sequence exon written 5 weeks ago by Ali.B • 0
1
vote
1
answer
107
views
1
answer
Using GFF3Writer in Biopython
gff3 ensembl gff biopython written 5 weeks ago by Alice • 230 • updated 5 weeks ago by finswimmer ♦ 2.8k
3
votes
1
answer
118
views
1
answer
VEP transcript CDS lenght
ensembl vep transcript written 7 weeks ago by cristinaluengoagullo • 0 • updated 7 weeks ago by genomax ♦ 49k
11
votes
4
answers
337
views
7 follow
4
answers
Mapping Ensembl Gene IDs with dot suffix
gene ensembl biomart bioconductor written 3 months ago by mattkarikomi • 20 • updated 7 weeks ago by PavolG • 0
0
votes
1
answer
194
views
1
answer
How to filter Ensembl cDNA and ncRNA FASTA files by primary assembly?
ensembl written 9 weeks ago by michael.mccarthy.404 • 0 • updated 8 weeks ago by Kevin Blighe ♦ 21k
19
votes
4
answers
4.3k
views
7 follow
4
answers
How To Retrieve Gene Variations From Ensembl Using The Perl Api?
perl ensembl api variation written 7.3 years ago by Jarretinha ♦ 3.2k • updated 8 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
123
views
1
answer
How to Deal With Multiple ZFIN_IDs
ensembl biomart id convert zfin written 8 weeks ago by sallehl • 0 • updated 8 weeks ago by Emily_Ensembl ♦ 15k
10
votes
3
answers
274
views
5 follow
3
answers
Forum: Survey: help define Gencode and NCBI primary transcripts
ncbi refseq forum gencode ensembl transcript written 10 weeks ago by Emily_Ensembl ♦ 15k
140
votes
3
answers
66k
views
85 follow
3
answers
Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
tool genome conversion coordinates ensembl liftover written 5.3 years ago by Malachi Griffith ♦ 16k
2
votes
1
answer
165
views
1
answer
How to find the gene chromosome in the mysql table of Ensembl Database
genome ensembl mysql written 12 weeks ago by xidianbill • 10 • updated 12 weeks ago by Pierre Lindenbaum ♦ 108k
1
vote
0
answers
178
views
0
answers
ENSEMBL VEP Inconsistent Results
ensembl vep written 12 weeks ago by azmanr • 0
6
votes
1
answer
236
views
5 follow
1
answer
What is agi and bgi in the Ensembl gtf file
agi gtf bgi rna-seq ensembl written 3 months ago by Vijay Lakhujani ♦ 2.5k • updated 12 weeks ago by Emily_Ensembl ♦ 15k
1
vote
1
answer
223
views
1
answer
News: Ensembl Perl API course, April 2018
news course training perl ensembl api written 5 months ago by Emily_Ensembl ♦ 15k
5
votes
1
answer
175
views
1
answer
choice of human genome before RNASeq mapping
human genome ensembl rnaseq mapping written 3 months ago by archie • 50 • updated 3 months ago by grant.hovhannisyan • 880
2
votes
0
answers
190
views
0
answers
Some symbols share the same ensembl ID in org.Hs.eg.db but not in ensembl website, how to deal with it?
org.hs.eg.db gene symbol ensembl written 3 months ago by Timze W • 10
0
votes
0
answers
138
views
0
answers
Cuffdiff genes.fpkm_tracking xloc IDs to Ensembl IDs
genes.fpkm_tracking ensembl cuffdiff xloc written 3 months ago by bryce.kirby • 0
5
votes
2
answers
276
views
2
answers
VEP tools output
ensembl vep output written 3 months ago by Nandini • 550 • updated 3 months ago by Ben_Ensembl • 600
5
votes
2
answers
215
views
2
answers
Help exploring unknown region
gene ensembl forum databases function prediction written 3 months ago by gpng • 0 • updated 3 months ago by Emily_Ensembl ♦ 15k
2
votes
1
answer
242
views
1
answer
Finding zebrafish promoters ENSEMBL
ensembl promoter written 3 months ago by Seigfried • 40 • updated 3 months ago by Ben_Ensembl • 600
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