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2
votes
1
answer
54
views
1
answer
Seqmonk has two CRCh38 human genome versions, which one is the major release?
genome assembly rna-seq ensembl written 12 days ago by salamandra • 130
8
votes
2
answers
174
views
5 follow
2
answers
problem in EnsemblID to gene symbol conversion in TCGA data
tcga read counts rna-seq ensembl written 15 days ago by nazaninhoseinkhan • 240 • updated 14 days ago by Erin_Ensembl • 80
0
votes
1
answer
84
views
1
answer
Ensembl biomaRt down
ensembl biomart written 14 days ago by sergio.artsc • 0 • updated 14 days ago by genomax ♦ 51k
3
votes
1
answer
169
views
1
answer
How can I add the specie associated name to ensembls ID in a fasta file (cds) ?
ensembl written 19 days ago by dtejadamartinez • 10 • updated 17 days ago by finswimmer ♦ 3.6k
4
votes
2
answers
155
views
2
answers
Find all rsid synonyms for a list of rsids
ensembl snps rsids written 19 days ago by Jab • 0 • updated 19 days ago by Mike Smith • 820
4
votes
2
answers
145
views
5 follow
2
answers
BigWig from ensembl assembly to UCSC session
ensembl bigwig ucsc written 25 days ago by Dataminer • 2.5k • updated 25 days ago by Devon Ryan ♦ 81k
1
vote
1
answer
906
views
1
answer
Retrieve upstream non-coding sequenses of genes from Ensembl or phytozome
gene ensembl phytozyme written 3.2 years ago by F • 3.1k • updated 26 days ago by zx8754 ♦ 4.6k
0
votes
0
answers
105
views
0
answers
Unknown Stringtie IDs produced when using Ensembl GTF
gtf ensembl stringtie rna-seq written 28 days ago by freuv • 10 • updated 27 days ago by Emily_Ensembl ♦ 15k
6
votes
1
answer
108
views
1
answer
Ensembl: Genes versus Transcripts
gene annotation ensembl written 27 days ago by nathaniel.schleif • 0 • updated 27 days ago by finswimmer ♦ 3.6k
3
votes
3
answers
248
views
5 follow
3
answers
Fasta file and GTF file for STAR alignment
ensembl star written 6 weeks ago by snp87 • 30 • updated 5 weeks ago by swbarnes2 ♦ 3.8k
3
votes
1
answer
133
views
1
answer
Ensembl API: How to get sequences by Gene ID for older Ensembl version?
ensembl api older version written 5 weeks ago by bi_Scholar • 0 • updated 5 weeks ago by Emily_Ensembl ♦ 15k
3
votes
1
answer
192
views
5 follow
1
answer
COSMIC to Ensembl mapping
assembly next-gen cosmic ensembl written 6 weeks ago by banerjeeshayantan • 50 • updated 6 weeks ago by Emily_Ensembl ♦ 15k
0
votes
0
answers
83
views
0
answers
Combining DNA methylation scores from ensembl
ensembl dnamethylation written 6 weeks ago by I.hemel • 0
2
votes
1
answer
161
views
1
answer
Update RefSeq database with Ensembl VEP
ensembl vep refseq written 7 weeks ago by rbagnall • 1.2k • updated 7 weeks ago by Emily_Ensembl ♦ 15k
1
vote
1
answer
158
views
1
answer
JBrowse (and Tablet) only show Ensembl transcripts/can't search by gene ID or symbol
ensembl jbrowse tablet written 8 weeks ago by mamillerpa • 20
1
vote
0
answers
201
views
0
answers
Fungi genomes: which database should I use?
genome ensembl jgi fungi blast written 3 months ago by tlorin • 240 • updated 7 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
132
views
1
answer
Ensembl rest getting exon only Sequence.
ensembl sequence exon written 8 weeks ago by Ali.B • 0
1
vote
1
answer
125
views
1
answer
Using GFF3Writer in Biopython
gff3 ensembl gff biopython written 9 weeks ago by Alice • 230 • updated 9 weeks ago by finswimmer ♦ 3.6k
3
votes
1
answer
136
views
1
answer
VEP transcript CDS lenght
ensembl vep transcript written 10 weeks ago by cristinaluengoagullo • 0 • updated 10 weeks ago by genomax ♦ 51k
11
votes
4
answers
384
views
7 follow
4
answers
Mapping Ensembl Gene IDs with dot suffix
gene ensembl biomart bioconductor written 4 months ago by mattkarikomi • 20 • updated 11 weeks ago by PavolG • 0
0
votes
1
answer
216
views
1
answer
How to filter Ensembl cDNA and ncRNA FASTA files by primary assembly?
ensembl written 3 months ago by michael.mccarthy.404 • 0 • updated 11 weeks ago by Kevin Blighe ♦ 24k
19
votes
4
answers
4.3k
views
7 follow
4
answers
How To Retrieve Gene Variations From Ensembl Using The Perl Api?
perl ensembl api variation written 7.4 years ago by Jarretinha ♦ 3.2k • updated 11 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
145
views
1
answer
How to Deal With Multiple ZFIN_IDs
ensembl biomart id convert zfin written 12 weeks ago by sallehl • 0 • updated 12 weeks ago by Emily_Ensembl ♦ 15k
10
votes
3
answers
307
views
5 follow
3
answers
Forum: Survey: help define Gencode and NCBI primary transcripts
ncbi refseq forum gencode ensembl transcript written 3 months ago by Emily_Ensembl ♦ 15k
140
votes
3
answers
67k
views
85 follow
3
answers
Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
tool genome conversion coordinates ensembl liftover written 5.4 years ago by Malachi Griffith ♦ 16k
2
votes
1
answer
184
views
1
answer
How to find the gene chromosome in the mysql table of Ensembl Database
genome ensembl mysql written 3 months ago by xidianbill • 10 • updated 3 months ago by Pierre Lindenbaum ♦ 110k
1
vote
0
answers
200
views
0
answers
ENSEMBL VEP Inconsistent Results
ensembl vep written 3 months ago by azmanr • 0
6
votes
1
answer
263
views
5 follow
1
answer
What is agi and bgi in the Ensembl gtf file
agi gtf bgi rna-seq ensembl written 3 months ago by Vijay Lakhujani ♦ 2.7k • updated 3 months ago by Emily_Ensembl ♦ 15k
1
vote
1
answer
244
views
1
answer
News: Ensembl Perl API course, April 2018
news course training perl ensembl api written 6 months ago by Emily_Ensembl ♦ 15k
5
votes
1
answer
203
views
1
answer
choice of human genome before RNASeq mapping
human genome ensembl rnaseq mapping written 3 months ago by archie • 50 • updated 3 months ago by grant.hovhannisyan • 900
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