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3
votes
1
answer
116
views
1
answer
Ensembl ID converter not working?
ensembl id conversion written 2 days ago by ericbrenner • 0
6
votes
2
answers
100
views
2
answers
miRNA corresponds to multiple ensembl gene IDs
mirbase ensembl mirna written 2 days ago by alcs417 • 20 • updated 2 days ago by Emily_Ensembl ♦ 13k
4
votes
2
answers
122
views
2
answers
Can you use Python to get download flanking sequences of genes from Ensembl's older releases/assemblies?
genome python sequence ensembl written 3 days ago by ericbrenner • 0 • updated 3 days ago by jared.andrews07 • 90
8
votes
1
answer
130
views
1
answer
How do you use Biomart to get info about genes that didn't originate from Ensembl?
genome ensembl biomart written 3 days ago by ericbrenner • 0 • updated 3 days ago by Jean-Karim Heriche ♦ 13k
3
votes
1
answer
121
views
1
answer
Why genomic information shown in UCSC/Ensembl browser for a specific gene is different from it's bed file?
genome gene next-gen ensembl ucsc written 4 days ago by bioinf_data-analyst9449 • 0 • updated 4 days ago by genecats.ucsc • 340
10
votes
5
answers
227
views
6 follow
5
answers
chrom.sizes computed locally
bigbed bed ucsc ensembl written 10 days ago by ypriverol • 0 • updated 8 days ago by cpad0112 • 1.9k
0
votes
0
answers
116
views
0
answers
Assembly Id to UCSC names
ncbi ensembl ucsc written 8 days ago by ypriverol • 0
4
votes
1
answer
138
views
1
answer
removing decimal from ENSEMBL gene ID from deseq2 output
R ensembl written 8 days ago by krushnach80 • 160 • updated 8 days ago by Emily_Ensembl ♦ 13k
2
votes
1
answer
138
views
1
answer
Differences between archived versions of ensembl
ensembl alignment rna-seq written 9 days ago by Joe.waldron • 0 • updated 8 days ago by Emily_Ensembl ♦ 13k
11
votes
3
answers
161
views
6 follow
3
answers
number of genes in human genome
gene_id ensembl written 10 days ago by grant.hovhannisyan • 260 • updated 10 days ago by Emily_Ensembl ♦ 13k
1
vote
1
answer
140
views
1
answer
Extract alignment blocks of a given region from MAF file having whole genome alignments
maf ensembl whole genome alignment ucsc written 11 days ago by urjaswita • 30 • updated 11 days ago by Emily_Ensembl ♦ 13k
2
votes
1
answer
135
views
1
answer
Fetch Phenotypes from Orthologues and GO terms for a NonModel organism Gene Set
ensembl biomart gene ontology written 17 days ago by DragonDNA • 50 • updated 12 days ago by Emily_Ensembl ♦ 13k
10
votes
1
answer
195
views
1
answer
No ensembl ID for gene ID
gene ensembl written 15 days ago by billykong200 • 0 • updated 15 days ago by Devon Ryan ♦ 70k
5
votes
1
answer
216
views
5 follow
1
answer
Using Terminal to Connect to Ensembl public MySQL Servers
ensembl mysql terminal written 19 days ago by oars • 40
114
votes
1
answer
53k
views
66 follow
1
answer
Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
tool genome conversion coordinates ensembl liftover written 4.6 years ago by Malachi Griffith ♦ 15k
3
votes
1
answer
218
views
1
answer
GENCODE versus Ensembl gene annotations
gtf ensembl gencode written 29 days ago by igor • 4.5k • updated 25 days ago by Astrid_Ensembl • 30
2
votes
1
answer
164
views
1
answer
SNP annotated outside gene location (Variant Effect Predictor)
ensembl vep snp variant effect predictor written 26 days ago by serpalma.v • 10 • updated 26 days ago by Denise - Open Targets • 4.0k
0
votes
1
answer
187
views
1
answer
merging humsavar dataset with UniprotKB human variation
ensembl swissprot uniprot snp annovar written 29 days ago by arronslacey • 220 • updated 29 days ago by emmahe • 40
1
vote
1
answer
159
views
1
answer
Using multiple filters in BiomaRt's getSequence
R biomart ensembl written 4 weeks ago by spiral01 • 60 • updated 4 weeks ago by Emily_Ensembl ♦ 13k
3
votes
1
answer
141
views
1
answer
Ensembl VEP 89 Output Format
ensembl vep written 4 weeks ago by bruce.moran • 280 • updated 4 weeks ago by Emily_Ensembl ♦ 13k
4
votes
1
answer
289
views
1
answer
No XIST in Emsembl cdna.fa
ensembl written 4 weeks ago by WouterDeCoster ♦ 21k • updated 4 weeks ago by Satyajeet Khare • 1.0k
9
votes
2
answers
267
views
5 follow
2
answers
DNA sequence of genes from vcf file
vcf variant calling bcftools gene ensembl written 7 weeks ago by bioinfo8 • 90 • updated 5 weeks ago by Whoknows • 590
7
votes
2
answers
264
views
7 follow
2
answers
Locating longest gene, CDS in Ensembl GTF
gtf ensembl longest gene cds written 5 weeks ago by oars • 40
1
vote
1
answer
187
views
1
answer
ensembl transcript id to gene symbol using biomart
R biomart ensembl written 5 weeks ago by hxlei613 • 70 • updated 5 weeks ago by Emily_Ensembl ♦ 13k
8
votes
4
answers
963
views
4
answers
Tool: pyGeno 1.2: Python package for Personalized Genomics and Proteomics
tool python dbsnp snp rna-seq ensembl written 2.5 years ago by Tariq Daouda • 190 • updated 5 weeks ago by haoye.ecust • 0
0
votes
0
answers
226
views
0
answers
Retrieving homologues of human proteins using Ensembl REST API?
orthologs ensembl written 3 months ago by db534 • 0 • updated 5 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
222
views
1
answer
Problem using biomaRt
ensembl biomart bioconductor error R written 6 weeks ago by cristian • 80
8
votes
3
answers
252
views
5 follow
3
answers
Convert unigene ID to ensembl ID
gene python mapping R ensembl written 6 weeks ago by jehu • 10 • updated 6 weeks ago by Spacebio • 80
14
votes
3
answers
441
views
6 follow
3
answers
convert human gene names to ensembl ID
gene ensembl mapping written 6 weeks ago by jehu • 10 • updated 6 weeks ago by Emily_Ensembl ♦ 13k
5
votes
2
answers
238
views
2
answers
Converting between Ensembl Versions
ensembl biomart written 7 weeks ago by jwhidd • 0 • updated 7 weeks ago by Mike Smith • 250
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