Showing: grepreset
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basic command in bash
filter grep rna-seq written 2 days ago by luzglongoria0
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155
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Filter VCF with bash commands
vcf grep awk bash written 8 days ago by ajuiwl30 • updated 8 days ago by dariober9.7k
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7 follow
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Faster way to get sequences from large fasta files?
fasta grep paired-ends written 25 days ago by emilywynn60 • updated 25 days ago by mike-zx110
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How to separate a strain of MTB drug wise?
python grep sed loop awk written 27 days ago by S AR40 • updated 27 days ago by rizoic90
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Extract only rows with main chromosomes (1-22, X, Y) on first column?
R grep script linux written 3 months ago by star60 • updated 10 weeks ago by benformatics320
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How do I extract Fasta Sequences based on a list of IDs?
grep sequence written 3 months ago by a.rex160 • updated 3 months ago by Rashedul Islam290
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GREP: out of memory
.gff heloci grep deseq2 mac os written 4 months ago by jaqx00840 • updated 4 months ago by Alex Reynolds26k
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Remove hypothetical proteins
fasta grep script written 4 months ago by biodano.geo0 • updated 4 months ago by RamRS19k
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Sorting samtools output by flag or grepping its tags
flag grep samtools chimeric written 15 months ago by BPors30 • updated 4 months ago by Biostar ♦♦ 20
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Selecting intergenic regions
grep shell file-handling written 5 months ago by vinayjrao110 • updated 5 months ago by M2015701160
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Extract fasta sequences from a file using a list in another file.
fasta grep header extract awk written 5 months ago by EBP910 • updated 5 months ago by cpad01129.9k
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Change fasta header sequence ID's
fasta grep oneliner written 4.2 years ago by thhaverk0 • updated 6 months ago by Biostar ♦♦ 20
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arranging columns and rows
grep awk bash written 7 months ago by Ambika20 • updated 7 months ago by Pierre Lindenbaum114k
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Extracting counts of reads into a matrix
reads grep counts unix written 7 months ago by rmash0 • updated 7 months ago by cpad01129.9k
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how to extract/grep lines containing specific word?
grep sed awk written 8 months ago by arsilan32460 • updated 8 months ago by Kevin Blighe32k
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7 follow
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grep a column based on a string
grep awk written 8 months ago by vinayjrao110 • updated 8 months ago by shenwei3564.2k
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removing lines that don't match by grep
grep file handling written 8 months ago by vinayjrao110 • updated 8 months ago by michael.ante2.7k
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Editing header by adding pipe in fasta file
fasta grep header editing written 9 months ago by muhammad.arslan0 • updated 9 months ago by Hugo140
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Confusion with grep command
grep deseq2 geneortholog terminal written 10 months ago by jaqx00840 • updated 10 months ago by genomax58k
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extracting a column by grepping particular rows
grep awk written 10 months ago by vinayjrao110 • updated 10 months ago by cpad01129.9k
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Picking out the first occurrence of a gene
grep awk written 10 months ago by vinayjrao110 • updated 10 months ago by cpad01129.9k
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making grep method specific in perl
perl grep finding variants written 11 months ago by bioinfo3550 • updated 11 months ago by mittu1602150
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Sequence retrieval from miRBase using miRBase sequence ids
perl grep mirna rna-seq awk written 11 months ago by jinutchirayath0 • updated 11 months ago by genomax58k
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Trying to get a GREP of things...
gene grep awk written 12 months ago by Hushus 20 • updated 12 months ago by Pierre Lindenbaum114k
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blast results: grepping and replacing
grep blast awk written 13 months ago by kinggang0 • updated 13 months ago by 5heikki7.8k
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Counting occurrence of character in fastq file
grep written 15 months ago by fiona.newberry80 • updated 15 months ago by Devon Ryan86k
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fasta files: keep only lines containing certain characters + the respective sequences
fasta grep sed written 16 months ago by Tmatamatamas0 • updated 16 months ago by Paul1.2k
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