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Showing: grep • reset
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3
votes
1
answer
90
views
1
answer
arranging columns and rows
grep awk bash written 9 days ago by Ambika • 20 • updated 9 days ago by Pierre Lindenbaum ♦ 106k
0
votes
2
answers
153
views
5 follow
2
answers
Extracting counts of reads into a matrix
reads grep counts unix written 4 weeks ago by rmash • 0 • updated 4 weeks ago by cpad0112 • 4.5k
1
vote
1
answer
156
views
1
answer
how to extract/grep lines containing specific word?
grep sed awk written 6 weeks ago by arsilan324 • 40 • updated 6 weeks ago by Kevin Blighe ♦ 17k
7
votes
3
answers
211
views
7 follow
3
answers
grep a column based on a string
grep awk written 8 weeks ago by vinayjrao • 100 • updated 8 weeks ago by shenwei356 • 3.5k
6
votes
2
answers
195
views
2
answers
removing lines that don't match by grep
grep file handling written 9 weeks ago by vinayjrao • 100 • updated 9 weeks ago by michael.ante • 2.4k
1
vote
2
answers
177
views
2
answers
grep errors for FASTA file (possible glimmer error?)
grep glimmer written 10 weeks ago by oars • 80
0
votes
2
answers
217
views
5 follow
2
answers
Editing header by adding pipe in fasta file
fasta grep header editing written 10 weeks ago by muhammad.arslan • 0 • updated 10 weeks ago by hlfzeus • 110
3
votes
0
answers
255
views
0
answers
Confusion with grep command
grep deseq2 geneortholog terminal written 3 months ago by jaqx008 • 10 • updated 3 months ago by genomax ♦ 46k
1
vote
2
answers
267
views
2
answers
extracting a column by grepping particular rows
grep awk written 4 months ago by vinayjrao • 100 • updated 4 months ago by cpad0112 • 4.5k
1
vote
2
answers
260
views
2
answers
Picking out the first occurrence of a gene
grep awk written 4 months ago by vinayjrao • 100 • updated 4 months ago by cpad0112 • 4.5k
0
votes
1
answer
191
views
1
answer
making grep method specific in perl
perl grep finding variants written 4 months ago by bioinfo355 • 0 • updated 4 months ago by mittu1602 • 140
6
votes
1
answer
400
views
5 follow
1
answer
Sequence retrieval from miRBase using miRBase sequence ids
perl grep mirna rna-seq awk written 5 months ago by jinutchirayath • 0 • updated 5 months ago by genomax ♦ 46k
1
vote
1
answer
255
views
1
answer
Trying to get a GREP of things...
gene grep awk written 5 months ago by Hushus • 10 • updated 5 months ago by Pierre Lindenbaum ♦ 106k
0
votes
3
answers
307
views
5 follow
3
answers
blast results: grepping and replacing
grep blast awk written 6 months ago by kinggang • 0 • updated 6 months ago by 5heikki ♦ 7.2k
2
votes
1
answer
337
views
1
answer
about Grep the complete sequences containing a specific motif in a fasta file
fasta grep sequence linux written 7 months ago by taojincs • 10 • updated 7 months ago by Philipp Bayer ♦ 5.4k
3
votes
1
answer
379
views
1
answer
Sorting samtools output by flag or grepping its tags
flag grep samtools chimeric written 8 months ago by BPors • 30 • updated 8 months ago by jkbonfield • 30
5
votes
1
answer
334
views
1
answer
Counting occurrence of character in fastq file
grep written 8 months ago by fiona.newberry • 70 • updated 8 months ago by Devon Ryan ♦ 78k
10
votes
3
answers
488
views
9 follow
3
answers
fasta files: keep only lines containing certain characters + the respective sequences
fasta grep sed written 9 months ago by Tmatamatamas • 0 • updated 9 months ago by Paul • 1.0k
4
votes
3
answers
317
views
3
answers
Problem in extraction of values from a list
perl grep vlookup written 9 months ago by Vinay Singh • 40
7
votes
0
answers
391
views
0
answers
save plots in for loop
R grep for loop jpeg written 10 months ago by mbk0asis • 320
0
votes
3
answers
667
views
7 follow
3
answers
Grep Position List
vcf grep written 11 months ago by BAGeno • 60 • updated 11 months ago by Maxime Lamontagne • 2.0k
8
votes
6
answers
507
views
9 follow
6
answers
Use egrep on only one column
grep unix written 13 months ago by ISB • 0 • updated 13 months ago by Rohit • 1.3k
9
votes
3
answers
422
views
3
answers
[solved] Read a file once and get next lines that match a list of pattern with awk ?
reads barcode grep sed awk written 13 months ago by Franck8413 • 10
3
votes
2
answers
495
views
2
answers
Extracting pairwise alignment info
pairwise alignement grep sed unix awk written 14 months ago by Kevin D • 10 • updated 14 months ago by 5heikki ♦ 7.2k
3
votes
2
answers
753
views
5 follow
2
answers
Grep the first match for each line of a pattern file
grep written 15 months ago by cyril.noel10 • 0 • updated 15 months ago by Pierre Lindenbaum ♦ 106k
11
votes
6
answers
556
views
8 follow
6
answers
How to print 2 lines if first has "*" in it
fasta grep written 16 months ago by bastianfromm • 0 • updated 16 months ago by Daniel • 3.5k
1
vote
2
answers
563
views
2
answers
Extracting fastq files, based on their fasta counterparts
fasta perl fastq grep database written 17 months ago by roblogan6 • 30 • updated 17 months ago by Brian Bushnell ♦ 15k
17
votes
3
answers
687
views
3
answers
String research in a fasta file
fasta grep written 17 months ago by Greta • 0 • updated 17 months ago by shenwei356 • 3.5k
1
vote
0
answers
592
views
0
answers
Why are there different record counts when using grep vs biopython's SeqIO.parse()?
grep biopython seqio written 18 months ago by ahtmatrix • 0
1
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2
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1.1k
views
2
answers
Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 2.5 years ago by crawlthrutacos • 0 • updated 20 months ago by Alex Reynolds ♦ 23k
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