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<prev • 51 results • page 1 of 2 • next >
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75
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basic command in bash
filter grep rna-seq written 2 days ago by luzglongoria • 0
10
votes
2
answers
155
views
2
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Filter VCF with bash commands
vcf grep awk bash written 8 days ago by ajuiwl • 30 • updated 8 days ago by dariober ♦ 9.7k
5
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2
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141
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7 follow
2
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Faster way to get sequences from large fasta files?
fasta grep paired-ends written 25 days ago by emilywynn6 • 0 • updated 25 days ago by mike-zx • 110
4
votes
1
answer
119
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1
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How to separate a strain of MTB drug wise?
python grep sed loop awk written 27 days ago by S AR • 40 • updated 27 days ago by rizoic • 90
13
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5
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302
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7 follow
5
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Extract only rows with main chromosomes (1-22, X, Y) on first column?
R grep script linux written 3 months ago by star • 60 • updated 10 weeks ago by benformatics • 320
2
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2
answers
218
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2
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How do I extract Fasta Sequences based on a list of IDs?
grep sequence written 3 months ago by a.rex • 160 • updated 3 months ago by Rashedul Islam • 290
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4
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778
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6 follow
4
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GREP: out of memory
.gff heloci grep deseq2 mac os written 4 months ago by jaqx008 • 40 • updated 4 months ago by Alex Reynolds ♦ 26k
6
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1
answer
232
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1
answer
Remove hypothetical proteins
fasta grep script written 4 months ago by biodano.geo • 0 • updated 4 months ago by RamRS ♦ 19k
3
votes
1
answer
602
views
1
answer
Sorting samtools output by flag or grepping its tags
flag grep samtools chimeric written 15 months ago by BPors • 30 • updated 4 months ago by Biostar ♦♦ 20
1
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0
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354
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5 follow
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grep/awk issue: can't extract sequences from a fasta file
fasta extraction sequence grep shell written 5 months ago by benoit.kunath • 10
4
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1
answer
281
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1
answer
Selecting intergenic regions
grep shell file-handling written 5 months ago by vinayjrao • 110 • updated 5 months ago by M201570116 • 0
5
votes
4
answers
558
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8 follow
4
answers
Extract fasta sequences from a file using a list in another file.
fasta grep header extract awk written 5 months ago by EBP91 • 0 • updated 5 months ago by cpad0112 • 9.9k
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1
answer
2.7k
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1
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Change fasta header sequence ID's
fasta grep oneliner written 4.2 years ago by thhaverk • 0 • updated 6 months ago by Biostar ♦♦ 20
3
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1
answer
274
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1
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arranging columns and rows
grep awk bash written 7 months ago by Ambika • 20 • updated 7 months ago by Pierre Lindenbaum ♦ 114k
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2
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299
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5 follow
2
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Extracting counts of reads into a matrix
reads grep counts unix written 7 months ago by rmash • 0 • updated 7 months ago by cpad0112 • 9.9k
2
votes
1
answer
420
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1
answer
how to extract/grep lines containing specific word?
grep sed awk written 8 months ago by arsilan324 • 60 • updated 8 months ago by Kevin Blighe ♦ 32k
7
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3
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2.0k
views
7 follow
3
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grep a column based on a string
grep awk written 8 months ago by vinayjrao • 110 • updated 8 months ago by shenwei356 ♦ 4.2k
6
votes
2
answers
367
views
2
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removing lines that don't match by grep
grep file handling written 8 months ago by vinayjrao • 110 • updated 8 months ago by michael.ante • 2.7k
1
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2
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323
views
2
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grep errors for FASTA file (possible glimmer error?)
grep glimmer written 9 months ago by oars • 150
0
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2
answers
395
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5 follow
2
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Editing header by adding pipe in fasta file
fasta grep header editing written 9 months ago by muhammad.arslan • 0 • updated 9 months ago by Hugo • 140
3
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0
answers
429
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0
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Confusion with grep command
grep deseq2 geneortholog terminal written 10 months ago by jaqx008 • 40 • updated 10 months ago by genomax ♦ 58k
1
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2
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389
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2
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extracting a column by grepping particular rows
grep awk written 10 months ago by vinayjrao • 110 • updated 10 months ago by cpad0112 • 9.9k
1
vote
2
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368
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2
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Picking out the first occurrence of a gene
grep awk written 10 months ago by vinayjrao • 110 • updated 10 months ago by cpad0112 • 9.9k
0
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1
answer
335
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1
answer
making grep method specific in perl
perl grep finding variants written 11 months ago by bioinfo355 • 0 • updated 11 months ago by mittu1602 • 150
6
votes
1
answer
744
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5 follow
1
answer
Sequence retrieval from miRBase using miRBase sequence ids
perl grep mirna rna-seq awk written 11 months ago by jinutchirayath • 0 • updated 11 months ago by genomax ♦ 58k
1
vote
1
answer
391
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1
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Trying to get a GREP of things...
gene grep awk written 12 months ago by Hushus • 20 • updated 12 months ago by Pierre Lindenbaum ♦ 114k
0
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3
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449
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5 follow
3
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blast results: grepping and replacing
grep blast awk written 13 months ago by kinggang • 0 • updated 13 months ago by 5heikki ♦ 7.8k
2
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1
answer
606
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1
answer
about Grep the complete sequences containing a specific motif in a fasta file
fasta grep sequence linux written 13 months ago by taojincs • 20 • updated 13 months ago by Philipp Bayer ♦ 5.7k
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1
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531
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1
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Counting occurrence of character in fastq file
grep written 15 months ago by fiona.newberry • 80 • updated 15 months ago by Devon Ryan ♦ 86k
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3
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700
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9 follow
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fasta files: keep only lines containing certain characters + the respective sequences
fasta grep sed written 16 months ago by Tmatamatamas • 0 • updated 16 months ago by Paul • 1.2k
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