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<prev • 55 results • page 1 of 2 • next >
6
votes
1
answer
96
views
1
answer
Extract in specific column with patter file
grep awk written 6 days ago by flogin • 20 • updated 6 days ago by Kevin Blighe ♦ 39k
1
vote
0
answers
114
views
0
answers
Extract several parts from fasta header
fasta grep sed unix bash written 22 days ago by rah • 20
4
votes
3
answers
235
views
3
answers
Passing a file to sed to remove all lines that match +1 in file B from file A
comm grep sed written 10 weeks ago by sdbaney • 0
3
votes
1
answer
178
views
1
answer
Awk, Sed, Grep to create a sequential numerical text replacement in my gtf file
grep sed awk written 11 weeks ago by sdbaney • 0 • updated 11 weeks ago by RamRS ♦ 20k
5
votes
1
answer
271
views
1
answer
How to separate a strain of MTB drug wise?
python grep sed loop awk written 5 months ago by S AR • 50
4
votes
0
answers
554
views
5 follow
0
answers
grep/awk issue: can't extract sequences from a fasta file
fasta extraction sequence grep shell written 9 months ago by benoit.kunath • 10 • updated 4 months ago by Biostar ♦♦ 20
0
votes
0
answers
159
views
0
answers
basic command in bash
filter grep rna-seq written 4 months ago by luzglongoria • 20
10
votes
2
answers
400
views
2
answers
Filter VCF with bash commands
vcf grep awk bash written 4 months ago by ajuiwl • 30 • updated 4 months ago by dariober ♦ 9.9k
5
votes
2
answers
233
views
7 follow
2
answers
Faster way to get sequences from large fasta files?
fasta grep paired-ends written 5 months ago by emilywynn6 • 10 • updated 5 months ago by mike-zx • 130
13
votes
5
answers
507
views
7 follow
5
answers
Extract only rows with main chromosomes (1-22, X, Y) on first column?
R grep script linux written 7 months ago by star • 130 • updated 6 months ago by benformatics • 640
2
votes
2
answers
425
views
2
answers
How do I extract Fasta Sequences based on a list of IDs?
grep sequence written 7 months ago by a.rex • 180 • updated 7 months ago by Rashedul Islam • 290
9
votes
4
answers
1.5k
views
6 follow
4
answers
GREP: out of memory
.gff heloci grep deseq2 mac os written 8 months ago by jaqx008 • 40 • updated 8 months ago by Alex Reynolds ♦ 27k
6
votes
1
answer
321
views
1
answer
Remove hypothetical proteins
fasta grep script written 8 months ago by biodano.geo • 0 • updated 8 months ago by RamRS ♦ 20k
3
votes
1
answer
806
views
1
answer
Sorting samtools output by flag or grepping its tags
flag grep samtools chimeric written 19 months ago by BPors • 30 • updated 8 months ago by Biostar ♦♦ 20
4
votes
1
answer
404
views
1
answer
Selecting intergenic regions
grep shell file-handling written 9 months ago by vinayjrao • 110 • updated 9 months ago by M201570116 • 0
5
votes
4
answers
1.7k
views
8 follow
4
answers
Extract fasta sequences from a file using a list in another file.
fasta grep header extract awk written 9 months ago by EBP91 • 0 • updated 9 months ago by cpad0112 ♦ 11k
3
votes
1
answer
2.8k
views
1
answer
Change fasta header sequence ID's
fasta grep oneliner written 4.6 years ago by thhaverk • 0 • updated 10 months ago by Biostar ♦♦ 20
3
votes
1
answer
353
views
1
answer
arranging columns and rows
grep awk bash written 11 months ago by Ambika • 20 • updated 11 months ago by Pierre Lindenbaum ♦ 118k
0
votes
2
answers
385
views
5 follow
2
answers
Extracting counts of reads into a matrix
reads grep counts unix written 12 months ago by rmash • 0 • updated 12 months ago by cpad0112 ♦ 11k
2
votes
1
answer
948
views
1
answer
how to extract/grep lines containing specific word?
grep sed awk written 12 months ago by arsilan324 • 70 • updated 12 months ago by Kevin Blighe ♦ 39k
7
votes
3
answers
3.8k
views
7 follow
3
answers
grep a column based on a string
grep awk written 12 months ago by vinayjrao • 110 • updated 12 months ago by shenwei356 ♦ 4.5k
6
votes
2
answers
479
views
2
answers
removing lines that don't match by grep
grep file handling written 13 months ago by vinayjrao • 110 • updated 13 months ago by michael.ante • 3.2k
1
vote
2
answers
404
views
2
answers
grep errors for FASTA file (possible glimmer error?)
grep glimmer written 13 months ago by oars • 150
0
votes
2
answers
523
views
5 follow
2
answers
Editing header by adding pipe in fasta file
fasta grep header editing written 13 months ago by muhammad.arslan • 0 • updated 13 months ago by Hugo • 150
3
votes
0
answers
503
views
0
answers
Confusion with grep command
grep deseq2 geneortholog terminal written 14 months ago by jaqx008 • 40 • updated 14 months ago by genomax ♦ 64k
1
vote
2
answers
450
views
2
answers
extracting a column by grepping particular rows
grep awk written 15 months ago by vinayjrao • 110 • updated 15 months ago by cpad0112 ♦ 11k
1
vote
2
answers
438
views
2
answers
Picking out the first occurrence of a gene
grep awk written 15 months ago by vinayjrao • 110 • updated 15 months ago by cpad0112 ♦ 11k
0
votes
1
answer
429
views
1
answer
making grep method specific in perl
perl grep finding variants written 15 months ago by bioinfo355 • 0 • updated 15 months ago by mittu1602 • 150
6
votes
1
answer
980
views
5 follow
1
answer
Sequence retrieval from miRBase using miRBase sequence ids
perl grep mirna rna-seq awk written 16 months ago by jinutchirayath • 0 • updated 16 months ago by genomax ♦ 64k
1
vote
1
answer
475
views
1
answer
Trying to get a GREP of things...
gene grep awk written 16 months ago by Hushus • 20 • updated 16 months ago by Pierre Lindenbaum ♦ 118k
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