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<prev • 88 results • page 1 of 3 • next >
1
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1
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126
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1
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How to extract out specific information from files within a directory?
python grep regex written 17 days ago by deep771992chanda • 10 • updated 17 days ago by zx8754 ♦ 9.7k
9
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2
answers
135
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5 follow
2
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Split delimited text into a new row
grep sed awk written 5 weeks ago by Ambika • 30 • updated 5 weeks ago by zx8754 ♦ 9.7k
0
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1
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182
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1
answer
I have to extract organism and host name from a NCBI .gp file but grep code is not creating something
fasta ncbi grep gp meta data written 8 weeks ago by oncelmiran6 • 0 • updated 8 weeks ago by JC ♦ 11k
3
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1
answer
147
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1
answer
Extract genes names from GOrilla output file
gene grep sed go awk written 8 weeks ago by rrapopor • 10 • updated 8 weeks ago by rpolicastro • 2.0k
1
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0
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137
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0
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Finding a gene in a whole genome
gene grep tblastn written 8 weeks ago by Idania • 0
2
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1
answer
178
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1
answer
Running a code in batch mode on a list of files
grep sed awk written 9 weeks ago by A • 3.9k
7
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2
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208
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2
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grep -v command
grep chr1 written 11 weeks ago by amitpande74 • 0 • updated 11 weeks ago by Pierre Lindenbaum ♦ 131k
3
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1
answer
148
views
1
answer
Extract out lines with 's__' into a new file together with first two lines of the file
command grep written 3 months ago by dpc • 150 • updated 3 months ago by antonioggsousa • 1.5k
0
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0
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144
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0
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Problem in subsetting a gtf based on ids in another file
gtf grep slurm shell bash written 3 months ago by newbie • 90
3
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3
answers
4.3k
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6 follow
3
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Grep the first match for each line of a pattern file
grep written 3.8 years ago by cyril.noel10 • 0 • updated 4 months ago by michael • 0
6
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1
answer
157
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1
answer
Grep VCF position awk
vcf grep awk written 4 months ago by the_cowa • 40 • updated 4 months ago by ATpoint ♦ 40k
1
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0
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330
views
0
answers
Extract list of gene coordinates from gff file
gene python gff grep awk written 4 months ago by the_cowa • 40
0
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1
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211
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1
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Bed file grepping from the list
bed grep awk written 4 months ago by the_cowa • 40 • updated 4 months ago by Pierre Lindenbaum ♦ 131k
0
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0
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204
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0
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grep multiple lines form file
grep shell script tool written 5 months ago by harry • 10 • updated 5 months ago by ATpoint ♦ 40k
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2
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202
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2
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How to check the pattern in a specific file present in which other files in a directory?
find grep linux xargs written 5 months ago by newbie • 90 • updated 5 months ago by Pierre Lindenbaum ♦ 131k
1
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1
answer
225
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1
answer
R partial string matching with constraints
pattern matching R grep written 6 months ago by 5utr • 350
3
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2
answers
374
views
2
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How to extract headers from MultiFasta file to generate taxonomy
fasta grep next-gen sequencing written 7 months ago by m.radz • 0
1
vote
1
answer
168
views
1
answer
If/Else loop for grep count
python grep if else snakemake written 7 months ago by mrmrwinter • 0 • updated 7 months ago by Pierre Lindenbaum ♦ 131k
1
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1
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164
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1
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Finding non ATCGN nucleotides in a fasta file?
genome fasta grep sequence iupac written 8 months ago by dpearton • 0
3
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1
answer
258
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1
answer
grep sorting question
grep awk sed unix bash written 8 months ago by rbronste • 360 • updated 8 months ago by RamRS ♦ 30k
0
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1
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248
views
1
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Making pattern of GT:AD:DP:PL column values to be replaced by o and 1.
vcf python grep machinelearning linux written 9 months ago by S AR • 50 • updated 8 months ago by Kevin Blighe ♦ 66k
2
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0
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180
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0
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Difficult filtering scenario of BED file
grep sed awk written 9 months ago by rbronste • 360
10
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4
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350
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7 follow
4
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How to remove just sequence ID's from a fasta file with multiple sequences
fasta grep sequence awk written 9 months ago by Nyksubuz • 0 • updated 9 months ago by Joe ♦ 18k
8
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0
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256
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0
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grep with -f switch is not working
grep written 11 months ago by 3335098459 • 30 • updated 11 months ago by zx8754 ♦ 9.7k
2
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0
answers
508
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0
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Extracting START and STOP codon position from Augustus GFF
augustus gff3 grep gff gene prediction written 12 months ago by mhfk2901 • 10
3
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2
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392
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7 follow
2
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How to find those files name which contains specific symbol i.e. underscore sign in column2?
find R grep awk written 13 months ago by sidrarafi89 • 10 • updated 13 months ago by bruce.moran • 860
12
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1
answer
626
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7 follow
1
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extract lines with multiple conditions on multiple fields/column
grep sed awk written 14 months ago by Sam • 20 • updated 14 months ago by Arup Ghosh ♦ 2.7k
7
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1
answer
408
views
1
answer
grep DNA after a pattern
dnaseq grep written 14 months ago by amitpande74 • 0 • updated 14 months ago by Benn ♦ 8.0k
3
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1
answer
290
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1
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extracting last word in [ ]
grep sed terminal linux written 15 months ago by 1234anjalianjali1234 • 30 • updated 15 months ago by ATpoint ♦ 40k
0
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2
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320
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2
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replace content of a column by the content of a variable
grep bash awk written 16 months ago by amandinelecerfdefer • 20
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