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<prev • 79 results • page 1 of 3 • next >
3
votes
3
answers
4.0k
views
6 follow
3
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Grep the first match for each line of a pattern file
grep written 3.5 years ago by cyril.noel10 • 0 • updated 17 days ago by michael • 0
6
votes
1
answer
94
views
1
answer
Grep VCF position awk
vcf grep awk written 4 weeks ago by the_cowa • 40 • updated 4 weeks ago by ATpoint ♦ 36k
1
vote
0
answers
142
views
0
answers
Extract list of gene coordinates from gff file
gene python gff grep awk written 5 weeks ago by the_cowa • 40
0
votes
1
answer
104
views
1
answer
Bed file grepping from the list
bed grep awk written 5 weeks ago by the_cowa • 40 • updated 5 weeks ago by Pierre Lindenbaum ♦ 129k
0
votes
0
answers
151
views
0
answers
grep multiple lines form file
grep shell script tool written 8 weeks ago by harry • 10 • updated 8 weeks ago by ATpoint ♦ 36k
4
votes
2
answers
145
views
2
answers
How to check the pattern in a specific file present in which other files in a directory?
find grep linux xargs written 8 weeks ago by newbie • 70 • updated 8 weeks ago by Pierre Lindenbaum ♦ 129k
1
vote
1
answer
131
views
1
answer
R partial string matching with constraints
pattern matching R grep written 11 weeks ago by 5utr • 350
3
votes
2
answers
279
views
2
answers
How to extract headers from MultiFasta file to generate taxonomy
fasta grep next-gen sequencing written 3 months ago by m.radz • 0
1
vote
1
answer
124
views
1
answer
If/Else loop for grep count
python grep if else snakemake written 4 months ago by mrmrwinter • 0 • updated 4 months ago by Pierre Lindenbaum ♦ 129k
1
vote
1
answer
111
views
1
answer
Finding non ATCGN nucleotides in a fasta file?
genome fasta grep sequence iupac written 4 months ago by dpearton • 0
3
votes
1
answer
220
views
1
answer
grep sorting question
grep awk sed unix bash written 5 months ago by rbronste • 360 • updated 5 months ago by RamRS ♦ 27k
0
votes
1
answer
186
views
1
answer
Making pattern of GT:AD:DP:PL column values to be replaced by o and 1.
vcf python grep machinelearning linux written 5 months ago by S AR • 50 • updated 5 months ago by Kevin Blighe ♦ 61k
2
votes
0
answers
149
views
0
answers
Difficult filtering scenario of BED file
grep sed awk written 5 months ago by rbronste • 360
10
votes
4
answers
272
views
7 follow
4
answers
How to remove just sequence ID's from a fasta file with multiple sequences
fasta grep sequence awk written 6 months ago by subrahmanya • 0 • updated 6 months ago by Joe ♦ 17k
8
votes
0
answers
207
views
0
answers
grep with -f switch is not working
grep written 7 months ago by 3335098459 • 20 • updated 7 months ago by zx8754 ♦ 9.4k
2
votes
0
answers
364
views
0
answers
Extracting START and STOP codon position from Augustus GFF
augustus gff3 grep gff gene prediction written 9 months ago by mhfk2901 • 10
3
votes
2
answers
347
views
7 follow
2
answers
How to find those files name which contains specific symbol i.e. underscore sign in column2?
find R grep awk written 10 months ago by sidrarafi89 • 10 • updated 10 months ago by bruce.moran • 830
12
votes
1
answer
449
views
7 follow
1
answer
extract lines with multiple conditions on multiple fields/column
grep sed awk written 10 months ago by Sam • 20 • updated 10 months ago by Arup Ghosh ♦ 2.5k
7
votes
1
answer
335
views
1
answer
grep DNA after a pattern
dnaseq grep written 10 months ago by amitpande74 • 0 • updated 10 months ago by Benn ♦ 8.0k
3
votes
1
answer
264
views
1
answer
extracting last word in [ ]
grep sed terminal linux written 11 months ago by 1234anjalianjali1234 • 30 • updated 11 months ago by ATpoint ♦ 36k
0
votes
2
answers
286
views
2
answers
replace content of a column by the content of a variable
grep bash awk written 13 months ago by amandinelecerfdefer • 20
5
votes
1
answer
352
views
1
answer
print non match to list lines of GTF file
grep bash awk written 13 months ago by Sam • 140
1
vote
0
answers
340
views
0
answers
Extract and ADD text information
grep text written 14 months ago by flogin • 250
1
vote
1
answer
2.6k
views
1
answer
grep command on VCF
vcf grep bcf unix written 14 months ago by jon.klonowski • 70
2
votes
2
answers
2.0k
views
2
answers
Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 4.7 years ago by crawlthrutacos • 0 • updated 14 months ago by Biostar ♦♦ 20
1
vote
1
answer
3.1k
views
6 follow
1
answer
How to count the length of fasta sequences?
fasta python shell scripting grep awk written 15 months ago by Dineshkumar K • 40 • updated 15 months ago by fhsantanna • 490
6
votes
1
answer
379
views
1
answer
Extract in specific column with patter file
grep awk written 16 months ago by flogin • 250 • updated 16 months ago by Kevin Blighe ♦ 61k
1
vote
0
answers
474
views
0
answers
Extract several parts from fasta header
fasta grep sed unix bash written 16 months ago by rah • 20
4
votes
3
answers
569
views
3
answers
Passing a file to sed to remove all lines that match +1 in file B from file A
comm grep sed written 18 months ago by sdbaney • 0
3
votes
1
answer
507
views
1
answer
Awk, Sed, Grep to create a sequential numerical text replacement in my gtf file
grep sed awk written 18 months ago by sdbaney • 0 • updated 18 months ago by RamRS ♦ 27k
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