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<prev • 47 results • page 1 of 2 • next >
13
votes
5
answers
216
views
7 follow
5
answers
Extract only rows with main chromosomes (1-22, X, Y) on first column?
R grep script linux written 6 weeks ago by star • 60 • updated 18 days ago by benformatics • 260
2
votes
2
answers
164
views
2
answers
How do I extract Fasta Sequences based on a list of IDs?
grep sequence written 7 weeks ago by a.rex • 150 • updated 7 weeks ago by Rashedul Islam • 290
9
votes
4
answers
488
views
6 follow
4
answers
GREP: out of memory
.gff heloci grep deseq2 mac os written 10 weeks ago by jaqx008 • 30 • updated 10 weeks ago by Alex Reynolds ♦ 25k
6
votes
1
answer
187
views
1
answer
Remove hypothetical proteins
fasta grep script written 10 weeks ago by biodano.geo • 0 • updated 10 weeks ago by Ram ♦ 17k
3
votes
1
answer
530
views
1
answer
Sorting samtools output by flag or grepping its tags
flag grep samtools chimeric written 13 months ago by BPors • 30 • updated 11 weeks ago by Biostar ♦♦ 20
1
vote
0
answers
281
views
5 follow
0
answers
grep/awk issue: can't extract sequences from a fasta file
fasta extraction sequence grep shell written 3 months ago by benoit.kunath • 10
4
votes
1
answer
229
views
1
answer
Selecting intergenic regions
grep shell file-handling written 3 months ago by vinayjrao • 100 • updated 3 months ago by M201570116 • 0
5
votes
4
answers
284
views
8 follow
4
answers
Extract fasta sequences from a file using a list in another file.
fasta grep header extract awk written 3 months ago by EBP91 • 0 • updated 3 months ago by cpad0112 • 8.8k
3
votes
1
answer
2.6k
views
1
answer
Change fasta header sequence ID's
fasta grep oneliner written 4.1 years ago by thhaverk • 0 • updated 4 months ago by Biostar ♦♦ 20
3
votes
1
answer
230
views
1
answer
arranging columns and rows
grep awk bash written 5 months ago by Ambika • 20 • updated 5 months ago by Pierre Lindenbaum ♦ 112k
0
votes
2
answers
265
views
5 follow
2
answers
Extracting counts of reads into a matrix
reads grep counts unix written 5 months ago by rmash • 0 • updated 5 months ago by cpad0112 • 8.8k
2
votes
1
answer
283
views
1
answer
how to extract/grep lines containing specific word?
grep sed awk written 6 months ago by arsilan324 • 60 • updated 6 months ago by Kevin Blighe ♦ 28k
7
votes
3
answers
1.1k
views
7 follow
3
answers
grep a column based on a string
grep awk written 6 months ago by vinayjrao • 100 • updated 6 months ago by shenwei356 ♦ 4.1k
6
votes
2
answers
314
views
2
answers
removing lines that don't match by grep
grep file handling written 6 months ago by vinayjrao • 100 • updated 6 months ago by michael.ante • 2.6k
1
vote
2
answers
290
views
2
answers
grep errors for FASTA file (possible glimmer error?)
grep glimmer written 7 months ago by oars • 150
0
votes
2
answers
336
views
5 follow
2
answers
Editing header by adding pipe in fasta file
fasta grep header editing written 7 months ago by muhammad.arslan • 0 • updated 7 months ago by Hugo • 130
3
votes
0
answers
381
views
0
answers
Confusion with grep command
grep deseq2 geneortholog terminal written 8 months ago by jaqx008 • 30 • updated 8 months ago by genomax ♦ 55k
1
vote
2
answers
350
views
2
answers
extracting a column by grepping particular rows
grep awk written 8 months ago by vinayjrao • 100 • updated 8 months ago by cpad0112 • 8.8k
1
vote
2
answers
340
views
2
answers
Picking out the first occurrence of a gene
grep awk written 9 months ago by vinayjrao • 100 • updated 9 months ago by cpad0112 • 8.8k
0
votes
1
answer
289
views
1
answer
making grep method specific in perl
perl grep finding variants written 9 months ago by bioinfo355 • 0 • updated 9 months ago by mittu1602 • 150
6
votes
1
answer
657
views
5 follow
1
answer
Sequence retrieval from miRBase using miRBase sequence ids
perl grep mirna rna-seq awk written 10 months ago by jinutchirayath • 0 • updated 10 months ago by genomax ♦ 55k
1
vote
1
answer
350
views
1
answer
Trying to get a GREP of things...
gene grep awk written 10 months ago by Hushus • 10 • updated 10 months ago by Pierre Lindenbaum ♦ 112k
0
votes
3
answers
403
views
5 follow
3
answers
blast results: grepping and replacing
grep blast awk written 11 months ago by kinggang • 0 • updated 11 months ago by 5heikki ♦ 7.6k
2
votes
1
answer
502
views
1
answer
about Grep the complete sequences containing a specific motif in a fasta file
fasta grep sequence linux written 11 months ago by taojincs • 10 • updated 11 months ago by Philipp Bayer ♦ 5.6k
5
votes
1
answer
463
views
1
answer
Counting occurrence of character in fastq file
grep written 13 months ago by fiona.newberry • 80 • updated 13 months ago by Devon Ryan ♦ 84k
10
votes
3
answers
643
views
9 follow
3
answers
fasta files: keep only lines containing certain characters + the respective sequences
fasta grep sed written 14 months ago by Tmatamatamas • 0 • updated 14 months ago by Paul • 1.1k
4
votes
3
answers
391
views
3
answers
Problem in extraction of values from a list
perl grep vlookup written 14 months ago by Vinay Singh • 40
7
votes
0
answers
517
views
0
answers
save plots in for loop
R grep for loop jpeg written 15 months ago by mbk0asis • 380
0
votes
3
answers
937
views
7 follow
3
answers
Grep Position List
vcf grep written 16 months ago by BAGeno • 80 • updated 16 months ago by Maxime Lamontagne • 2.0k
8
votes
6
answers
723
views
9 follow
6
answers
Use egrep on only one column
grep unix written 17 months ago by ISB • 0 • updated 17 months ago by Rohit • 1.3k
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