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3
votes
1
answer
107
views
1
answer
grep sorting question
grep awk sed unix bash written 8 days ago by rbronste • 340 • updated 8 days ago by RamRS ♦ 25k
0
votes
1
answer
98
views
1
answer
Making pattern of GT:AD:DP:PL column values to be replaced by o and 1.
vcf python grep machinelearning linux written 22 days ago by S AR • 50 • updated 19 days ago by Kevin Blighe ♦ 54k
2
votes
0
answers
99
views
0
answers
Difficult filtering scenario of BED file
grep sed awk written 28 days ago by rbronste • 340
10
votes
4
answers
164
views
7 follow
4
answers
How to remove just sequence ID's from a fasta file with multiple sequences
fasta grep sequence awk written 6 weeks ago by subrahmanya • 0 • updated 6 weeks ago by Joe ♦ 16k
8
votes
0
answers
154
views
0
answers
grep with -f switch is not working
grep written 12 weeks ago by 3335098459 • 20 • updated 12 weeks ago by zx8754 ♦ 9.0k
2
votes
0
answers
220
views
0
answers
Extracting START and STOP codon position from Augustus GFF
augustus gff3 grep gff gene prediction written 4 months ago by mhfk2901 • 10
3
votes
2
answers
269
views
7 follow
2
answers
How to find those files name which contains specific symbol i.e. underscore sign in column2?
find R grep awk written 5 months ago by sidrarafi89 • 10 • updated 5 months ago by bruce.moran • 670
12
votes
1
answer
271
views
7 follow
1
answer
extract lines with multiple conditions on multiple fields/column
grep sed awk written 5 months ago by Sam • 20 • updated 5 months ago by Arup Ghosh ♦ 2.1k
7
votes
1
answer
237
views
1
answer
grep DNA after a pattern
dnaseq grep written 5 months ago by amitpande74 • 0 • updated 5 months ago by Benn ♦ 7.9k
3
votes
1
answer
227
views
1
answer
extracting last word in [ ]
grep sed terminal linux written 7 months ago by 1234anjalianjali1234 • 30 • updated 7 months ago by ATpoint ♦ 29k
0
votes
2
answers
243
views
2
answers
replace content of a column by the content of a variable
grep bash awk written 8 months ago by amandinelecerfdefer • 20
5
votes
1
answer
290
views
1
answer
print non match to list lines of GTF file
grep bash awk written 8 months ago by Sam • 140
1
vote
0
answers
263
views
0
answers
Extract and ADD text information
grep text written 9 months ago by flogin • 150
1
vote
1
answer
2.1k
views
1
answer
grep command on VCF
vcf grep bcf unix written 10 months ago by jon.klonowski • 70
2
votes
2
answers
1.8k
views
2
answers
Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 4.3 years ago by crawlthrutacos • 0 • updated 10 months ago by Biostar ♦♦ 20
1
vote
1
answer
1.8k
views
6 follow
1
answer
How to count the length of fasta sequences?
fasta python shell scripting grep awk written 10 months ago by Dineshkumar K • 30 • updated 10 months ago by fhsantanna • 460
6
votes
1
answer
322
views
1
answer
Extract in specific column with patter file
grep awk written 11 months ago by flogin • 150 • updated 11 months ago by Kevin Blighe ♦ 54k
1
vote
0
answers
365
views
0
answers
Extract several parts from fasta header
fasta grep sed unix bash written 11 months ago by rah • 20
4
votes
3
answers
496
views
3
answers
Passing a file to sed to remove all lines that match +1 in file B from file A
comm grep sed written 13 months ago by sdbaney • 0
3
votes
1
answer
427
views
1
answer
Awk, Sed, Grep to create a sequential numerical text replacement in my gtf file
grep sed awk written 14 months ago by sdbaney • 0 • updated 14 months ago by RamRS ♦ 25k
5
votes
1
answer
489
views
1
answer
How to separate a strain of MTB drug wise?
python grep sed loop awk written 16 months ago by S AR • 50
4
votes
0
answers
917
views
5 follow
0
answers
grep/awk issue: can't extract sequences from a fasta file
fasta extraction sequence grep shell written 20 months ago by benoit.kunath • 10 • updated 15 months ago by Biostar ♦♦ 20
0
votes
0
answers
346
views
0
answers
basic command in bash
filter grep rna-seq written 15 months ago by luzglongoria • 40
10
votes
2
answers
937
views
2
answers
Filter VCF with bash commands
vcf grep awk bash written 15 months ago by ajuiwl • 30 • updated 15 months ago by dariober ♦ 11k
5
votes
2
answers
446
views
7 follow
2
answers
Faster way to get sequences from large fasta files?
fasta grep paired-ends written 16 months ago by emilywynn6 • 10 • updated 16 months ago by mike-zx • 180
13
votes
5
answers
1.3k
views
7 follow
5
answers
Extract only rows with main chromosomes (1-22, X, Y) on first column?
R grep script linux written 18 months ago by star • 210 • updated 17 months ago by benformatics • 1.4k
4
votes
2
answers
1.6k
views
2
answers
How do I extract Fasta Sequences based on a list of IDs?
grep sequence written 19 months ago by a.rex • 200 • updated 19 months ago by Rashedul Islam • 340
9
votes
4
answers
3.2k
views
6 follow
4
answers
GREP: out of memory
.gff heloci grep deseq2 mac os written 19 months ago by jaqx008 • 70 • updated 19 months ago by Alex Reynolds ♦ 29k
6
votes
1
answer
567
views
1
answer
Remove hypothetical proteins
fasta grep script written 19 months ago by biodano.geo • 20 • updated 19 months ago by RamRS ♦ 25k
3
votes
1
answer
1.4k
views
1
answer
Sorting samtools output by flag or grepping its tags
flag grep samtools chimeric written 2.5 years ago by BPors • 40 • updated 20 months ago by Biostar ♦♦ 20
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