Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 90 results • page 1 of 3 • next >
1
vote
2
answers
90
views
2
answers
how to filter sequence database with bash?
fasta database sequencing grep bash written 11 days ago by Lisa Prudnikow • 0 • updated 11 days ago by Jorge Amigo ♦ 12k
19
votes
5
answers
18k
views
14 follow
5
answers
Extract fasta sequences from a file using a list in another file.
fasta grep header extract awk written 2.6 years ago by EBP91 • 10 • updated 13 days ago by Rashedul Islam • 390
0
votes
0
answers
187
views
5 follow
0
answers
Why doesn't my grep expression work?
grep regex written 5 weeks ago by requiem_data • 0 • updated 23 days ago by Biostar ♦♦ 20
2
votes
1
answer
1.8k
views
1
answer
about Grep the complete sequences containing a specific motif in a fasta file
fasta grep sequence linux written 3.3 years ago by taojincs • 50 • updated 4 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
189
views
1
answer
How to extract out specific information from files within a directory?
python grep regex written 3 months ago by deep771992chanda • 30 • updated 3 months ago by zx8754 ♦ 9.9k
9
votes
2
answers
179
views
5 follow
2
answers
Split delimited text into a new row
grep sed awk written 4 months ago by Ambika • 40 • updated 4 months ago by zx8754 ♦ 9.9k
0
votes
1
answer
241
views
1
answer
I have to extract organism and host name from a NCBI .gp file but grep code is not creating something
fasta ncbi grep gp meta data written 4 months ago by oncelmiran6 • 0 • updated 4 months ago by JC ♦ 12k
3
votes
1
answer
200
views
1
answer
Extract genes names from GOrilla output file
gene grep sed go awk written 4 months ago by rrapopor • 10 • updated 4 months ago by rpolicastro ♦ 3.1k
1
vote
0
answers
184
views
0
answers
Finding a gene in a whole genome
gene grep tblastn written 4 months ago by Idania • 0
2
votes
1
answer
234
views
1
answer
Running a code in batch mode on a list of files
grep sed awk written 4 months ago by A • 3.9k
7
votes
2
answers
258
views
2
answers
grep -v command
grep chr1 written 5 months ago by amitpande74 • 10 • updated 5 months ago by Pierre Lindenbaum ♦ 132k
3
votes
1
answer
186
views
1
answer
Extract out lines with 's__' into a new file together with first two lines of the file
command grep written 5 months ago by dpc • 150 • updated 5 months ago by antonioggsousa • 1.9k
0
votes
0
answers
207
views
0
answers
Problem in subsetting a gtf based on ids in another file
gtf grep slurm shell bash written 6 months ago by newbie • 90
3
votes
3
answers
4.6k
views
6 follow
3
answers
Grep the first match for each line of a pattern file
grep written 4.0 years ago by cyril.noel10 • 0 • updated 6 months ago by michael • 0
6
votes
1
answer
210
views
1
answer
Grep VCF position awk
vcf grep awk written 7 months ago by the_cowa • 40 • updated 7 months ago by ATpoint ♦ 44k
1
vote
0
answers
576
views
0
answers
Extract list of gene coordinates from gff file
gene python gff grep awk written 7 months ago by the_cowa • 40
0
votes
1
answer
335
views
1
answer
Bed file grepping from the list
bed grep awk written 7 months ago by the_cowa • 40 • updated 7 months ago by Pierre Lindenbaum ♦ 132k
0
votes
0
answers
239
views
0
answers
grep multiple lines form file
grep shell script tool written 8 months ago by harry • 10 • updated 8 months ago by ATpoint ♦ 44k
4
votes
2
answers
259
views
2
answers
How to check the pattern in a specific file present in which other files in a directory?
find grep linux xargs written 8 months ago by newbie • 90 • updated 8 months ago by Pierre Lindenbaum ♦ 132k
1
vote
1
answer
319
views
1
answer
R partial string matching with constraints
pattern matching R grep written 9 months ago by 5utr • 350
3
votes
2
answers
478
views
2
answers
How to extract headers from MultiFasta file to generate taxonomy
fasta grep next-gen sequencing written 10 months ago by m.radz • 0
1
vote
1
answer
201
views
1
answer
If/Else loop for grep count
python grep if else snakemake written 10 months ago by mrmrwinter • 30 • updated 10 months ago by Pierre Lindenbaum ♦ 132k
1
vote
1
answer
216
views
1
answer
Finding non ATCGN nucleotides in a fasta file?
genome fasta grep sequence iupac written 10 months ago by dpearton • 0
3
votes
1
answer
304
views
1
answer
grep sorting question
grep awk sed unix bash written 11 months ago by rbronste • 370 • updated 11 months ago by _r_am ♦ 32k
0
votes
1
answer
298
views
1
answer
Making pattern of GT:AD:DP:PL column values to be replaced by o and 1.
vcf python grep machinelearning linux written 11 months ago by S AR • 50 • updated 11 months ago by Kevin Blighe ♦ 69k
2
votes
0
answers
213
views
0
answers
Difficult filtering scenario of BED file
grep sed awk written 11 months ago by rbronste • 370
10
votes
4
answers
418
views
7 follow
4
answers
How to remove just sequence ID's from a fasta file with multiple sequences
fasta grep sequence awk written 12 months ago by Nyksubuz • 10 • updated 12 months ago by Joe ♦ 18k
8
votes
0
answers
291
views
0
answers
grep with -f switch is not working
grep written 13 months ago by 3335098459 • 30 • updated 13 months ago by zx8754 ♦ 9.9k
2
votes
0
answers
623
views
0
answers
Extracting START and STOP codon position from Augustus GFF
augustus gff3 grep gff gene prediction written 15 months ago by mhfk2901 • 10
3
votes
2
answers
429
views
7 follow
2
answers
How to find those files name which contains specific symbol i.e. underscore sign in column2?
find R grep awk written 16 months ago by sidrarafi89 • 10 • updated 16 months ago by bruce.moran • 860
<prev • 90 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • United States, 1 minute ago
  • Republic of Ireland, 2 minutes ago
  • United States, 4 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1280 users visited in the last hour