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3
votes
1
answer
66
views
1
answer
extracting last word in [ ]
grep sed terminal linux written 4 days ago by 1234anjalianjali1234 • 30 • updated 4 days ago by ATpoint ♦ 19k
0
votes
2
answers
132
views
2
answers
replace content of a column by the content of a variable
grep bash awk written 6 weeks ago by amandinelecerfdefer • 20
5
votes
1
answer
156
views
1
answer
print non match to list lines of GTF file
grep bash awk written 6 weeks ago by Sam • 110
1
vote
0
answers
130
views
0
answers
Extract and ADD text information
grep text written 9 weeks ago by flogin • 150
1
vote
1
answer
293
views
1
answer
grep command on VCF
vcf grep bcf unix written 3 months ago by jon.klonowski • 30
2
votes
2
answers
1.6k
views
2
answers
Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 3.7 years ago by crawlthrutacos • 0 • updated 3 months ago by Biostar ♦♦ 20
0
votes
1
answer
562
views
6 follow
1
answer
How to count the length of fasta sequences?
fasta python shell scripting grep awk written 3 months ago by Dineshkumar K • 10 • updated 3 months ago by fhsantanna • 440
6
votes
1
answer
195
views
1
answer
Extract in specific column with patter file
grep awk written 4 months ago by flogin • 150 • updated 4 months ago by Kevin Blighe ♦ 46k
1
vote
0
answers
195
views
0
answers
Extract several parts from fasta header
fasta grep sed unix bash written 4 months ago by rah • 20
4
votes
3
answers
336
views
3
answers
Passing a file to sed to remove all lines that match +1 in file B from file A
comm grep sed written 6 months ago by sdbaney • 0
3
votes
1
answer
266
views
1
answer
Awk, Sed, Grep to create a sequential numerical text replacement in my gtf file
grep sed awk written 6 months ago by sdbaney • 0 • updated 6 months ago by RamRS ♦ 23k
5
votes
1
answer
350
views
1
answer
How to separate a strain of MTB drug wise?
python grep sed loop awk written 9 months ago by S AR • 50
4
votes
0
answers
688
views
5 follow
0
answers
grep/awk issue: can't extract sequences from a fasta file
fasta extraction sequence grep shell written 13 months ago by benoit.kunath • 10 • updated 8 months ago by Biostar ♦♦ 20
0
votes
0
answers
227
views
0
answers
basic command in bash
filter grep rna-seq written 8 months ago by luzglongoria • 20
10
votes
2
answers
615
views
2
answers
Filter VCF with bash commands
vcf grep awk bash written 8 months ago by ajuiwl • 30 • updated 8 months ago by dariober ♦ 10k
5
votes
2
answers
316
views
7 follow
2
answers
Faster way to get sequences from large fasta files?
fasta grep paired-ends written 9 months ago by emilywynn6 • 10 • updated 9 months ago by mike-zx • 140
13
votes
5
answers
765
views
7 follow
5
answers
Extract only rows with main chromosomes (1-22, X, Y) on first column?
R grep script linux written 11 months ago by star • 170 • updated 10 months ago by benformatics • 950
2
votes
2
answers
933
views
2
answers
How do I extract Fasta Sequences based on a list of IDs?
grep sequence written 11 months ago by a.rex • 190 • updated 11 months ago by Rashedul Islam • 310
9
votes
4
answers
2.2k
views
6 follow
4
answers
GREP: out of memory
.gff heloci grep deseq2 mac os written 12 months ago by jaqx008 • 50 • updated 12 months ago by Alex Reynolds ♦ 28k
6
votes
1
answer
404
views
1
answer
Remove hypothetical proteins
fasta grep script written 12 months ago by biodano.geo • 0 • updated 12 months ago by RamRS ♦ 23k
3
votes
1
answer
997
views
1
answer
Sorting samtools output by flag or grepping its tags
flag grep samtools chimeric written 23 months ago by BPors • 40 • updated 13 months ago by Biostar ♦♦ 20
4
votes
1
answer
556
views
1
answer
Selecting intergenic regions
grep shell file-handling written 13 months ago by vinayjrao • 130 • updated 13 months ago by M201570116 • 0
9
votes
4
answers
3.6k
views
9 follow
4
answers
Extract fasta sequences from a file using a list in another file.
fasta grep header extract awk written 13 months ago by EBP91 • 0 • updated 13 months ago by cpad0112 ♦ 11k
3
votes
1
answer
2.9k
views
1
answer
Change fasta header sequence ID's
fasta grep oneliner written 4.9 years ago by thhaverk • 0 • updated 14 months ago by Biostar ♦♦ 20
3
votes
1
answer
425
views
1
answer
arranging columns and rows
grep awk bash written 15 months ago by Ambika • 30 • updated 15 months ago by Pierre Lindenbaum ♦ 121k
0
votes
2
answers
471
views
5 follow
2
answers
Extracting counts of reads into a matrix
reads grep counts unix written 16 months ago by rmash • 0 • updated 16 months ago by cpad0112 ♦ 11k
2
votes
1
answer
1.5k
views
1
answer
how to extract/grep lines containing specific word?
grep sed awk written 16 months ago by arsilan324 • 70 • updated 16 months ago by Kevin Blighe ♦ 46k
8
votes
3
answers
5.3k
views
7 follow
3
answers
grep a column based on a string
grep awk written 17 months ago by vinayjrao • 130 • updated 17 months ago by shenwei356 ♦ 4.7k
6
votes
2
answers
573
views
2
answers
removing lines that don't match by grep
grep file handling written 17 months ago by vinayjrao • 130 • updated 17 months ago by michael.ante • 3.3k
1
vote
2
answers
470
views
2
answers
grep errors for FASTA file (possible glimmer error?)
grep glimmer written 17 months ago by oars • 150
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