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Showing: grep • reset
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<prev • 53 results • page 1 of 2 • next >
4
votes
3
answers
170
views
3
answers
Passing a file to sed to remove all lines that match +1 in file B from file A
comm grep sed written 14 days ago by sdbaney • 0
3
votes
1
answer
131
views
1
answer
Awk, Sed, Grep to create a sequential numerical text replacement in my gtf file
grep sed awk written 25 days ago by sdbaney • 0 • updated 25 days ago by RamRS ♦ 20k
5
votes
1
answer
226
views
1
answer
How to separate a strain of MTB drug wise?
python grep sed loop awk written 3 months ago by S AR • 50
4
votes
0
answers
497
views
5 follow
0
answers
grep/awk issue: can't extract sequences from a fasta file
fasta extraction sequence grep shell written 7 months ago by benoit.kunath • 10 • updated 9 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
118
views
0
answers
basic command in bash
filter grep rna-seq written 10 weeks ago by luzglongoria • 0
10
votes
2
answers
292
views
2
answers
Filter VCF with bash commands
vcf grep awk bash written 11 weeks ago by ajuiwl • 30 • updated 11 weeks ago by dariober ♦ 9.8k
5
votes
2
answers
198
views
7 follow
2
answers
Faster way to get sequences from large fasta files?
fasta grep paired-ends written 3 months ago by emilywynn6 • 10 • updated 3 months ago by mike-zx • 110
13
votes
5
answers
394
views
7 follow
5
answers
Extract only rows with main chromosomes (1-22, X, Y) on first column?
R grep script linux written 5 months ago by star • 80 • updated 4 months ago by benformatics • 400
2
votes
2
answers
293
views
2
answers
How do I extract Fasta Sequences based on a list of IDs?
grep sequence written 5 months ago by a.rex • 170 • updated 5 months ago by Rashedul Islam • 290
9
votes
4
answers
1.2k
views
6 follow
4
answers
GREP: out of memory
.gff heloci grep deseq2 mac os written 6 months ago by jaqx008 • 40 • updated 6 months ago by Alex Reynolds ♦ 27k
6
votes
1
answer
281
views
1
answer
Remove hypothetical proteins
fasta grep script written 6 months ago by biodano.geo • 0 • updated 6 months ago by RamRS ♦ 20k
3
votes
1
answer
708
views
1
answer
Sorting samtools output by flag or grepping its tags
flag grep samtools chimeric written 17 months ago by BPors • 30 • updated 6 months ago by Biostar ♦♦ 20
4
votes
1
answer
345
views
1
answer
Selecting intergenic regions
grep shell file-handling written 7 months ago by vinayjrao • 110 • updated 7 months ago by M201570116 • 0
5
votes
4
answers
1.0k
views
8 follow
4
answers
Extract fasta sequences from a file using a list in another file.
fasta grep header extract awk written 7 months ago by EBP91 • 0 • updated 7 months ago by cpad0112 ♦ 10k
3
votes
1
answer
2.8k
views
1
answer
Change fasta header sequence ID's
fasta grep oneliner written 4.4 years ago by thhaverk • 0 • updated 8 months ago by Biostar ♦♦ 20
3
votes
1
answer
313
views
1
answer
arranging columns and rows
grep awk bash written 9 months ago by Ambika • 20 • updated 9 months ago by Pierre Lindenbaum ♦ 116k
0
votes
2
answers
341
views
5 follow
2
answers
Extracting counts of reads into a matrix
reads grep counts unix written 10 months ago by rmash • 0 • updated 10 months ago by cpad0112 ♦ 10k
2
votes
1
answer
644
views
1
answer
how to extract/grep lines containing specific word?
grep sed awk written 10 months ago by arsilan324 • 60 • updated 10 months ago by Kevin Blighe ♦ 35k
7
votes
3
answers
2.8k
views
7 follow
3
answers
grep a column based on a string
grep awk written 11 months ago by vinayjrao • 110 • updated 11 months ago by shenwei356 ♦ 4.4k
6
votes
2
answers
429
views
2
answers
removing lines that don't match by grep
grep file handling written 11 months ago by vinayjrao • 110 • updated 11 months ago by michael.ante • 2.9k
1
vote
2
answers
363
views
2
answers
grep errors for FASTA file (possible glimmer error?)
grep glimmer written 11 months ago by oars • 150
0
votes
2
answers
459
views
5 follow
2
answers
Editing header by adding pipe in fasta file
fasta grep header editing written 11 months ago by muhammad.arslan • 0 • updated 11 months ago by Hugo • 140
3
votes
0
answers
469
views
0
answers
Confusion with grep command
grep deseq2 geneortholog terminal written 12 months ago by jaqx008 • 40 • updated 12 months ago by genomax ♦ 60k
1
vote
2
answers
418
views
2
answers
extracting a column by grepping particular rows
grep awk written 13 months ago by vinayjrao • 110 • updated 13 months ago by cpad0112 ♦ 10k
1
vote
2
answers
399
views
2
answers
Picking out the first occurrence of a gene
grep awk written 13 months ago by vinayjrao • 110 • updated 13 months ago by cpad0112 ♦ 10k
0
votes
1
answer
380
views
1
answer
making grep method specific in perl
perl grep finding variants written 13 months ago by bioinfo355 • 0 • updated 13 months ago by mittu1602 • 150
6
votes
1
answer
882
views
5 follow
1
answer
Sequence retrieval from miRBase using miRBase sequence ids
perl grep mirna rna-seq awk written 14 months ago by jinutchirayath • 0 • updated 14 months ago by genomax ♦ 60k
1
vote
1
answer
434
views
1
answer
Trying to get a GREP of things...
gene grep awk written 14 months ago by Hushus • 20 • updated 14 months ago by Pierre Lindenbaum ♦ 116k
0
votes
3
answers
489
views
5 follow
3
answers
blast results: grepping and replacing
grep blast awk written 15 months ago by kinggang • 0 • updated 15 months ago by 5heikki ♦ 8.0k
2
votes
1
answer
723
views
1
answer
about Grep the complete sequences containing a specific motif in a fasta file
fasta grep sequence linux written 16 months ago by taojincs • 20 • updated 16 months ago by Philipp Bayer ♦ 5.9k
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