3
votes
0
replies
386
views
3
votes
0
replies
635
views
0
votes
0
replies
567
views
1
vote
0
replies
296
views
1
vote
0
replies
567
views
3
votes
0
replies
523
views
3
votes
0
replies
232
views
1
vote
0
replies
534
views
4
votes
0
replies
153
views
1
vote
0
replies
642
views
5
votes
0
replies
717
views
2
votes
0
replies
595
views
1
vote
0
replies
608
views
3
votes
0
replies
189
views
0
votes
0
replies
624
views
3
votes
0
replies
651
views
1
vote
0
replies
807
views
4
votes
0
replies
621
views
1
vote
0
replies
565
views
2
votes
0
replies
340
views
3
votes
0
replies
754
views
1
vote
0
replies
597
views
4
votes
0
replies
632
views
2
votes
0
replies
381
views
2
votes
0
replies
586
views
3
votes
0
replies
710
views
2
votes
0
replies
548
views
4
votes
0
replies
560
views
1
vote
0
replies
668
views
1
vote
0
replies
610
views
1
vote
0
replies
577
views
4
votes
0
replies
316
views
2
votes
0
replies
591
views
4
votes
0
replies
376
views
1
vote
0
replies
572
views
0
votes
0
replies
600
views
1
vote
0
replies
613
views
1
vote
0
replies
718
views
3
votes
0
replies
577
views
3
votes
0
replies
619
views
2
votes
0
replies
671
views
2
votes
0
replies
630
views
2
votes
0
replies
666
views
3
votes
0
replies
646
views
3
votes
0
replies
412
views
0
votes
0
replies
661
views
2
votes
0
replies
457
views
3
votes
0
replies
228
views
2
votes
0
replies
571
views
2
votes
0
replies
550
views
Recent Votes
Recent Locations •
All
India, 1 minute ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 3 minutes ago
Canada, 4 minutes ago
United Kingdom, 4 minutes ago
Italy, 4 minutes ago
The Netherlands, 4 minutes ago
UCLA, 4 minutes ago
Recent Awards •
All
Popular Question to
matteo.levorato
•
0
Popular Question to
Palgrave
▴
110
Popular Question to
DBScan
▴
300
Popular Question to
chrisk
•
0
Popular Question to
mbrav005
•
0
Popular Question to
Sofia
•
0
Popular Question to
jen
▴
10
Recent Replies
Comment: RNA seq analysis
by
prifa
▴
10
Thank you so much Matthias this is really helpful, I got insight from this. Have a nice day
Answer: Differential Expression with limma: Contrast and Design Matrix, combinatorial ap
by
dariober
14k
> Is this a statistically valid approach to compare the impact of any bacterial exposure and genotype?
At a glance, it seems fine to me…
Comment: Filtering Multi-sample VCF file for all except one Genotype
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Answer: Filtering VCF files based on VAF giving incorrect results
by
Pierre Lindenbaum
161k
using vcfilterjdk: https://jvarkit.readthedocs.io/en/latest/VcfFilterJdk/
java -jar ${JVARKIT_DIST}/jvarkit.jar vcffilterjdk …
Comment: Applying the metacell2 algorithm using python
by
JACKY
▴
140
I have one more question please. When reading the h5ad file at the very beginning, do I need to perform the usual scanpy normalization step…
Comment: Using Cutadapt to trim adapters from paired-end small RNA sequence data
by
melissa.joubert
•
0
Thank you! This was going to be my next option - to simply use the Read_1 libraries for all samples.
Can I ask about the second option you…
Comment: Filtering Multi-sample VCF file for all except one Genotype
by
schmince
•
0
Thanks, that was exactly what i needed
Comment: Benchmarking RNASeq Variant Calling Pipeline (Short Reads)
by
Esraa
•
0
Thank you! I will try searching for this more and see if it would fit my analysis purposes.
Comment: Benchmarking RNASeq Variant Calling Pipeline (Short Reads)
by
Esraa
•
0
Thank you so much for answering! I actually found some studies doing it the way you mentioned.
I ran the GATK best practices pipeline on t…
Comment: BWA alignment
by
a.alnawfal.1992
▴
260
that's great, but i believe the issue is related to stdin rather than index
Comment: How to calculate coverage of Nanopore long read data?
by
Arton
•
0
Thank you! I eventually used the information generated by three tools (samtools coverage+ mosdepth + NanoPlot).
Comment: Alphaphold 3 pLDDT coloring scheme in chimerax?
by
mbrav005
•
0
Thank you Sir! you are right my model is not very good. Do You know how I can improve the scores. Also I am able to color the structure by …
Comment: Overlapping Ranges within Granges object
by
ntsopoul
▴
60
you are on to something… if I use reduce to find the “overlaping regions” in a secon GRanges object, what do I do next?
Traffic: 2478 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6