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37 results • Page
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2
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1.1k
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Herald:
The Biostar Herald for Thursday, June 15, 2023
herald
11 months ago by
Biostar
2.8k
1
vote
0
replies
844
views
Herald:
The Biostar Herald for Tuesday, May 23, 2023
herald
11 months ago by
Biostar
2.8k
1
vote
0
replies
807
views
Herald:
The Biostar Herald for Wednesday, August 02, 2023
herald
9 months ago by
Biostar
2.8k
2
votes
0
replies
778
views
Herald:
The Biostar Herald for Monday, June 05, 2023
herald
11 months ago by
Biostar
2.8k
4
votes
1
reply
762
views
Herald:
The Biostar Herald for Monday, August 28, 2023
herald
updated 8 months ago by
Jesse
▴ 770 • written 8 months ago by
Biostar
2.8k
2
votes
0
replies
695
views
Herald:
The Biostar Herald for Wednesday, August 09, 2023
herald
9 months ago by
Biostar
2.8k
1
vote
0
replies
617
views
Herald:
The Biostar Herald for Thursday, August 24, 2023
herald
8 months ago by
Biostar
2.8k
4
votes
1
reply
572
views
Herald:
The Biostar Herald for Monday, October 09, 2023
herald
written 7 months ago by
Biostar
2.8k
4
votes
0
replies
560
views
Herald:
The Biostar Herald for Wednesday, September 20, 2023
herald
7 months ago by
Biostar
2.8k
3
votes
0
replies
515
views
Herald:
The Biostar Herald for Tuesday, September 26, 2023
herald
7 months ago by
Biostar
2.8k
4
votes
0
replies
505
views
Herald:
The Biostar Herald for Wednesday, September 06, 2023
herald
8 months ago by
Biostar
2.8k
2
votes
0
replies
498
views
Herald:
The Biostar Herald for Monday, October 23, 2023
herald
6 months ago by
Biostar
2.8k
2
votes
1
reply
464
views
Herald:
The Biostar Herald for Tuesday, December 19, 2023
herald
updated 4 months ago by
cmdcolin
★ 3.8k • written 4 months ago by
Biostar
2.8k
3
votes
0
replies
461
views
Herald:
The Biostar Herald for Monday, October 16, 2023
herald
7 months ago by
Biostar
2.8k
2
votes
0
replies
457
views
Herald:
The Biostar Herald for Monday, October 30, 2023
herald
6 months ago by
Biostar
2.8k
4
votes
0
replies
439
views
Herald:
The Biostar Herald for Monday, November 06, 2023
herald
6 months ago by
Biostar
2.8k
3
votes
0
replies
423
views
Herald:
The Biostar Herald for Monday, November 20, 2023
herald
5 months ago by
Biostar
2.8k
3
votes
0
replies
411
views
Herald:
The Biostar Herald for Monday, November 13, 2023
herald
6 months ago by
Biostar
2.8k
3
votes
0
replies
386
views
Herald:
The Biostar Herald for Monday, November 27, 2023
herald
5 months ago by
Biostar
2.8k
2
votes
0
replies
381
views
Herald:
The Biostar Herald for Monday, December 04, 2023
herald
5 months ago by
Biostar
2.8k
4
votes
0
replies
376
views
Herald:
The Biostar Herald for Monday, December 11, 2023
herald
5 months ago by
Biostar
2.8k
2
votes
0
replies
340
views
Herald:
The Biostar Herald for Monday, January 08, 2024
herald
4 months ago by
Biostar
2.8k
4
votes
0
replies
315
views
Herald:
The Biostar Herald for Monday, February 26, 2024
herald
11 weeks ago by
Biostar
2.8k
3
votes
0
replies
311
views
Herald:
The Biostar Herald for Monday, January 22, 2024
herald
3 months ago by
Biostar
2.8k
1
vote
0
replies
299
views
Herald:
The Biostar Herald for Monday, January 15, 2024
herald
4 months ago by
Biostar
2.8k
1
vote
0
replies
296
views
Herald:
The Biostar Herald for Wednesday, January 31, 2024
herald
3 months ago by
Biostar
2.8k
2
votes
0
replies
274
views
Herald:
The Biostar Herald for Monday, February 12, 2024
herald
3 months ago by
Biostar
2.8k
1
vote
1
reply
248
views
Herald:
The Biostar Herald for Tuesday, April 23, 2024
herald
updated 21 days ago by
Pierre Lindenbaum
161k • written 21 days ago by
Biostar
2.8k
1
vote
0
replies
246
views
Herald:
The Biostar Herald for Tuesday, February 20, 2024
herald
12 weeks ago by
Biostar
2.8k
3
votes
0
replies
232
views
Herald:
The Biostar Herald for Monday, March 11, 2024
herald
9 weeks ago by
Biostar
2.8k
3
votes
0
replies
228
views
Herald:
The Biostar Herald for Monday, March 25, 2024
herald
7 weeks ago by
Biostar
2.8k
6
votes
0
replies
222
views
Herald:
The Biostar Herald for Monday, April 15, 2024
herald
29 days ago by
Biostar
2.8k
1
vote
0
replies
207
views
Herald:
The Biostar Herald for Wednesday, April 03, 2024
herald
5 weeks ago by
Biostar
2.8k
3
votes
0
replies
189
views
Herald:
The Biostar Herald for Tuesday, April 09, 2024
herald
5 weeks ago by
Biostar
2.8k
2
votes
0
replies
164
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
8 days ago by
Biostar
2.8k
4
votes
0
replies
152
views
Herald:
The Biostar Herald for Monday, April 29, 2024
herald
15 days ago by
Biostar
2.8k
2
votes
0
replies
133
views
Herald:
The Biostar Herald for Monday, May 13, 2024
herald
1 day ago by
Biostar
2.8k
37 results • Page
1 of 1
Recent Votes
What is Deepvariant default filtering values ?
Answer: Filtering Multi-sample VCF file for all except one Genotype
Answer: Alphaphold 3 pLDDT coloring scheme in chimerax?
Comment: Benchmarking RNASeq Variant Calling Pipeline (Short Reads)
Comment: Bamutils/ClipOverlap
Comment: How to calculate coverage of Nanopore long read data?
Comment: Overlapping Ranges within Granges object
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matteo.levorato
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Recent Replies
Comment: Filtering Multi-sample VCF file for all except one Genotype
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Answer: Filtering VCF files based on VAF giving incorrect results
by
Pierre Lindenbaum
161k
using vcfilterjdk: https://jvarkit.readthedocs.io/en/latest/VcfFilterJdk/ java -jar ${JVARKIT_DIST}/jvarkit.jar vcffilterjdk …
Comment: Applying the metacell2 algorithm using python
by
JACKY
▴ 140
I have one more question please. When reading the h5ad file at the very beginning, do I need to perform the usual scanpy normalization step…
Comment: Using Cutadapt to trim adapters from paired-end small RNA sequence data
by
melissa.joubert
• 0
Thank you! This was going to be my next option - to simply use the Read_1 libraries for all samples. Can I ask about the second option you…
Comment: Filtering Multi-sample VCF file for all except one Genotype
by
schmince
• 0
Thanks, that was exactly what i needed
Comment: Benchmarking RNASeq Variant Calling Pipeline (Short Reads)
by
Esraa
• 0
Thank you! I will try searching for this more and see if it would fit my analysis purposes.
Comment: Benchmarking RNASeq Variant Calling Pipeline (Short Reads)
by
Esraa
• 0
Thank you so much for answering! I actually found some studies doing it the way you mentioned. I ran the GATK best practices pipeline on t…
Comment: BWA alignment
by
a.alnawfal.1992
▴ 260
that's great, but i believe the issue is related to stdin rather than index
Comment: BWA alignment
by
a.alnawfal.1992
▴ 260
it is not!!
Comment: How to calculate coverage of Nanopore long read data?
by
Arton
• 0
Thank you! I eventually used the information generated by three tools (samtools coverage+ mosdepth + NanoPlot).
Comment: Alphaphold 3 pLDDT coloring scheme in chimerax?
by
mbrav005
• 0
Thank you Sir! you are right my model is not very good. Do You know how I can improve the scores. Also I am able to color the structure by …
Comment: Polish a large genome with Pilon
by
sansan_96
▴ 90
..........
Comment: Overlapping Ranges within Granges object
by
ntsopoul
▴ 60
you are on to something… if I use reduce to find the “overlaping regions” in a secon GRanges object, what do I do next?
Comment: Using ggplotly in R
by
jen
▴ 10
Thank you Jared for your response. I took a look at the documentation you provided and am trying my best to follow along, but can't seem to…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
by
Juke34
8.6k
Right I heard there is an issue since Perl v5.36. You may have better luck using conda. Or the best way is to use the container. Or downgra…
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