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2
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1
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308
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1
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kallisto + sleuth: no results
R sleuth kallisto rna-seq written 11 weeks ago by stephanie.devos • 0 • updated 5 weeks ago by philgev2 • 0
45
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2
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2.9k
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26 follow
2
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Tool: Hera: A new tool for RNA-Seq analysis
star gene fusion tool rna-seq kallisto written 11 weeks ago by sonpham • 320 • updated 6 weeks ago by y.divyatej • 10
2
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1
answer
160
views
1
answer
Are TPM values generated by different programs comparable?
stringtie tpm kallisto written 7 weeks ago by amy.bashir • 60 • updated 7 weeks ago by h.mon ♦ 9.0k
0
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0
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169
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0
answers
Sleuth PCA plots - how to change axis to percentage?
R sleuth pca kallisto rna-seq written 9 weeks ago by BioBing • 80
0
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0
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186
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0
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Paired and Multivariate sleuth
R sleuth kallisto rna-seq written 11 weeks ago by Tim D • 10
0
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1
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303
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1
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Kallisto run error
alignment kallisto rna-seq written 11 weeks ago by shoujun.gu • 240
2
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3
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412
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3
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Kallisto pseudobam to IGV
alignment igv kallisto pseudobam rna-seq written 3 months ago by mac • 50 • updated 11 weeks ago by Antonio R. Franco • 3.4k
0
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0
answers
268
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0
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Difference Between Gene Expression And Transcript Expression
kallisto rna-seq written 11 weeks ago by morteza.khabiri • 0
4
votes
1
answer
229
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1
answer
Kallisto : Compare TPM between samples from different illumina sequencers (HiSeq2000 and NextSeq500)
tpm kallisto written 3 months ago by Nicolas Rosewick • 5.4k • updated 3 months ago by andrew.j.skelton73 • 3.9k
2
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0
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207
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0
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Use kallisto with ONT (nanopore) cDNA long reads
long reads kallisto nanopore written 3 months ago by Nicolas Rosewick • 5.4k
0
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0
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203
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0
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Kallisto Pseudobam - Conversion to Genomic Coordinates
kallisto pseudobam written 3 months ago by ATPoint • 1.6k
0
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0
answers
265
views
0
answers
Kallisto/Sleuth - issue when using own annotations in the sleuth_prep() function
R sleuth kallisto rna-seq written 4 months ago by BioBing • 80
0
votes
1
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232
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1
answer
GSEA produces too few enriched sets
kallisto gsea transcriptome written 4 months ago by crimsontabaq • 40 • updated 4 months ago by kristoffer.vittingseerup • 300
3
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2
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813
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2
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ENSEMBL Transcript_Accession ID conversion
ensembl sleuth kallisto rna-seq written 19 months ago by dinindu.senanayake • 0 • updated 4 months ago by WouterDeCoster ♦ 22k
3
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1
answer
253
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1
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salmon, kallisto psuedoaligners are failing to process
aligners salmon kallisto rna-seq written 4 months ago by dr.prasad.bvls • 10 • updated 4 months ago by Rob ♦ 2.1k
3
votes
1
answer
195
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1
answer
Subset of transcripts - Do I need to re-scale the TPM values?
tpm kallisto rna-seq written 4 months ago by user230613 • 250
2
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1
answer
367
views
1
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Getting average fragment length for single end reads
differential expresion kallisto rna-seq written 4 months ago by Sreeraj Thamban • 30 • updated 4 months ago by Buffo • 480
4
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2
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446
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2
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kallisto: strand-specific and fragment length calculation
kallisto rna-seq written 5 months ago by user230613 • 250 • updated 5 months ago by pmelsted • 50
5
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3
answers
454
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3
answers
Help for finding the right FASTA file for kallisto
fasta kallisto rna-seq written 5 months ago by swamyvinny • 10 • updated 5 months ago by Sreeraj Thamban • 30
0
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0
answers
233
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0
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transcript to gene mapping after sleuth run
R sleuth biomart rna-seq kallisto written 5 months ago by bioinfo8 • 90
2
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1
answer
295
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1
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Will variance between the number of reads mapped in samples impact my differential analysis?
sleuth kallisto rna-seq written 5 months ago by a.rex • 80 • updated 5 months ago by Istvan Albert ♦♦ 74k
1
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0
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216
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0
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sequencing QC metrics from kallisto
kallisto written 6 months ago by alerodriguez • 40
3
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1
answer
313
views
1
answer
RNASeq reads from two bacterial species
trinity co-culture kallisto rsem rna-seq written 7 months ago by alyamahmoud • 0 • updated 7 months ago by h.mon ♦ 9.0k
1
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1
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619
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1
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Using kallisto for metagenomic analysis
metagenomics kallisto written 12 months ago by igor • 4.6k
3
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0
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431
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0
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Main difference between RSEM and k-mer based quantification methods
salmon rna-seq rsem kallisto written 8 months ago by uki_al • 20
1
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0
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543
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0
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Understanding Sleuth output for multiple samples
sleuth kallisto rna-seq written 8 months ago by Bharat Iyengar • 230
0
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0
answers
340
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0
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featureCounts with pseudobam
featurecounts salmon rna-seq pseudobam kallisto written 9 months ago by mccormack • 20 • updated 9 months ago by genomax ♦ 34k
0
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0
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412
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0
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What is the Sleuth intercept and how can Sleuth be used when you have >2 treatment types?
sleuth salmon kallisto rna-seq dte written 9 months ago by james.lloyd • 70
0
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0
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310
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0
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kallisto to metaseqR
R next-gen kallisto rna-seq written 10 months ago by bioinfo8 • 90
5
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3
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910
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3
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Sleuth: Combined lrt and wt tests, clustered heatmap
R sleuth kallisto rna-seq heatmap written 10 months ago by bioinfo8 • 90
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