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<prev • 74 results • page 1 of 3 • next >
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Is Kallisto able to deal with UMIs and paired-end RNASeq?
umi kallisto rna-seq written 2 days ago by antgomo • 30 • updated 2 days ago by genomax ♦ 59k
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2
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1.1k
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5 follow
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kallisto + sleuth: no results
R sleuth kallisto rna-seq written 16 months ago by stephanie.devos • 0 • updated 3 days ago by gilbo • 10
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1
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140
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5 follow
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Is Kallisto good for identifying non-coding RNA in a RNAseq data?
bioinformatics kallisto rna-seq allignment written 8 days ago by priyankaraina10 • 10 • updated 8 days ago by kristoffer.vittingseerup • 1.0k
3
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1
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99
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1
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estimating read length and SD for Kallisto (single-end QuantSeq reads)
quantseq alignment kallisto lexogen rna-seq written 15 days ago by cats_dogs • 0 • updated 14 days ago by michael.ante • 2.8k
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1.9k
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1
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Is Sleuth a good package?
R sleuth kallisto rna-seq written 2.2 years ago by SmallChess • 460
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2
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143
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How to compare kallisto and stringtie output
stringtie next-gen kallisto rna-seq sequencing written 24 days ago by yusuf.zhc • 0 • updated 23 days ago by kristoffer.vittingseerup • 1.0k
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1
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1.0k
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1
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What is the Sleuth intercept and how can Sleuth be used when you have >2 treatment types?
sleuth salmon kallisto rna-seq dte written 23 months ago by james.lloyd • 80 • updated 27 days ago by lalvarez • 10
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108
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How to run sleuth in single run mode?
sleuth kallisto rna-seq written 5 weeks ago by aquaq • 10
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133
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Kallisto estimated sd and fragment length
alignment kallisto rna-seq written 6 weeks ago by bharata1803 • 390
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Should cndas provided by Ensembl be filtered by ccds or biotype prior to running kallisto?
isoforms kallisto written 8 weeks ago by holgerbrandl • 30
2
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1
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163
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1
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Single Kallisto abundance
deseq2 kallisto rna-seq written 12 weeks ago by Duckula • 0
3
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1
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203
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1
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Will Kallisto or Salmon perform streaming alignment from the Sequence Read Archive?
pseudoaligners salmon kallisto written 3 months ago by b10hazard • 20 • updated 3 months ago by RamRS ♦ 19k
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Is Kallisto Sleuth pipeline suitable for all organisms?
sleuth kallisto rna-seq written 6 months ago by SMILE • 80 • updated 3 months ago by prasundutta87 • 280
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2
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291
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Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
kallisto rna-seq igv written 3 months ago by Kristin Muench • 350 • updated 3 months ago by pmelsted • 80
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235
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Kallisto and homologous genes expression
honologous genes ase kallisto written 3 months ago by afli • 140
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251
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Recent metatranscriptomics workflow
metatranscriptomics workflow kallisto written 5 months ago by dark.lord • 0
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433
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2
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kallisto pseudoaligned bam files to IGV
kallisto rna-seq igv written 5 months ago by hothriananya • 50
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266
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What is the optimal read length filter for Kallisto post adapter removal?
kallisto rna-seq written 5 months ago by bipin • 10
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1
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761
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1
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Sleuth PCA plots - how to change axis to percentage?
R sleuth pca kallisto rna-seq written 16 months ago by BioBing • 100 • updated 5 months ago by bruce.moran • 420
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534
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Kallisto TPM values
tpm kallisto written 6 months ago by oliveira.bhn • 10
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what is the corresponding proteome or transcriptome (cDNA fasta in Ensembl) file in NCBI?
assembly quantification kallisto rna-seq index written 6 months ago by SMILE • 80
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6 follow
1
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Getting average fragment length for single end reads
differential expresion kallisto rna-seq written 19 months ago by Sreeraj Thamban • 100 • updated 6 months ago by dark.lord • 0
4
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5 follow
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Paired and Multivariate sleuth
R sleuth kallisto rna-seq written 16 months ago by Tim D • 50 • updated 6 months ago by samantha_jeschonek • 50
8
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1
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569
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7 follow
1
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Kallisto will not produce .bam files
kallisto rna-seq written 7 months ago by Kristin Muench • 350 • updated 7 months ago by Kevin Blighe ♦ 33k
6
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2
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756
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Alternative splicing analysis following kallisto?
kallisto rna-seq alternative splicing written 8 months ago by dina.hesham139 • 100 • updated 7 months ago by kristoffer.vittingseerup • 1.0k
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2
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599
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Should kallisto take hours to run?
kallisto rna-seq written 8 months ago by Kristin Muench • 350
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1
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553
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1
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Predicted gene differentially expressed in Kallisto, not in FeatureCounts
featurecounts kallisto written 9 months ago by Bastien Hervé • 2.7k • updated 9 months ago by h.mon ♦ 21k
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407
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Sleuth_prep error in R - unused argument
software error R sleuth kallisto rna-seq written 9 months ago by Abiterkuile • 20
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549
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Kallisto quant output file abundance.tsv and run_info.json missing
sleuth alignment kallisto rna-seq written 9 months ago by Abiterkuile • 20 • updated 9 months ago by Kevin Blighe ♦ 33k
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kallisto/sleuth for single sample pathway enrichment
sleuth kallisto rna-seq pathway enrichment written 9 months ago by endre.sebestyen • 0 • updated 9 months ago by Rik Verdonck • 50
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