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<prev • 44 results • page 1 of 2 • next >
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Sleuth PCA plots - how to change axis to percentage?
R sleuth pca kallisto rna-seq written 9 days ago by BioBing • 80
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2
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2.3k
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26 follow
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Tool: Hera: A new tool for RNA-Seq analysis
star gene fusion tool rna-seq kallisto written 26 days ago by sonpham • 310 • updated 18 days ago by y.divyatej • 0
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208
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kallisto + sleuth: no results
R sleuth kallisto rna-seq written 20 days ago by stephanie.devos • 0
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108
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Paired and Multivariate sleuth
R sleuth kallisto rna-seq written 20 days ago by Tim D • 10
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1
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240
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1
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Kallisto run error
alignment kallisto rna-seq written 23 days ago by shoujun.gu • 10
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3
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299
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3
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Kallisto pseudobam to IGV
alignment igv kallisto pseudobam rna-seq written 4 weeks ago by mac • 50 • updated 25 days ago by Antonio R. Franco • 3.4k
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185
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Difference Between Gene Expression And Transcript Expression
kallisto rna-seq written 25 days ago by morteza.khabiri • 0
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1
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172
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1
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Kallisto : Compare TPM between samples from different illumina sequencers (HiSeq2000 and NextSeq500)
tpm kallisto written 5 weeks ago by Nicolas Rosewick • 5.2k • updated 5 weeks ago by andrew.j.skelton73 • 3.6k
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134
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Use kallisto with ONT (nanopore) cDNA long reads
long reads kallisto nanopore written 5 weeks ago by Nicolas Rosewick • 5.2k
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141
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Kallisto Pseudobam - Conversion to Genomic Coordinates
kallisto pseudobam written 7 weeks ago by ATPoint • 710
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192
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Kallisto/Sleuth - issue when using own annotations in the sleuth_prep() function
R sleuth kallisto rna-seq written 9 weeks ago by BioBing • 80
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1
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187
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1
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GSEA produces too few enriched sets
kallisto gsea transcriptome written 9 weeks ago by crimsontabaq • 40 • updated 9 weeks ago by kristoffer.vittingseerup • 210
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2
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738
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ENSEMBL Transcript_Accession ID conversion
ensembl sleuth kallisto rna-seq written 17 months ago by dinindu.senanayake • 0 • updated 10 weeks ago by WouterDeCoster ♦ 20k
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1
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183
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1
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salmon, kallisto psuedoaligners are failing to process
aligners salmon kallisto rna-seq written 11 weeks ago by dr.prasad.bvls • 10 • updated 11 weeks ago by Rob ♦ 2.0k
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1
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155
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1
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Subset of transcripts - Do I need to re-scale the TPM values?
tpm kallisto rna-seq written 12 weeks ago by user230613 • 240
2
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1
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219
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1
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Getting average fragment length for single end reads
differential expresion kallisto rna-seq written 3 months ago by Sreeraj Thamban • 30 • updated 3 months ago by Buffo • 470
4
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2
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306
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2
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kallisto: strand-specific and fragment length calculation
kallisto rna-seq written 3 months ago by user230613 • 240 • updated 3 months ago by pmelsted • 50
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3
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316
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3
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Help for finding the right FASTA file for kallisto
fasta kallisto rna-seq written 3 months ago by swamyvinny • 0 • updated 3 months ago by Sreeraj Thamban • 30
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187
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transcript to gene mapping after sleuth run
R sleuth biomart rna-seq kallisto written 3 months ago by bioinfo8 • 80
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1
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251
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1
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Will variance between the number of reads mapped in samples impact my differential analysis?
sleuth kallisto rna-seq written 3 months ago by a.rex • 60 • updated 3 months ago by Istvan Albert ♦♦ 73k
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174
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sequencing QC metrics from kallisto
kallisto written 4 months ago by alerodriguez • 30
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1
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262
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1
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RNASeq reads from two bacterial species
trinity co-culture kallisto rsem rna-seq written 5 months ago by alyamahmoud • 0 • updated 5 months ago by h.mon ♦ 8.0k
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1
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555
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1
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Using kallisto for metagenomic analysis
metagenomics kallisto written 10 months ago by igor • 4.4k
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340
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Main difference between RSEM and k-mer based quantification methods
salmon rna-seq rsem kallisto written 6 months ago by uki_al • 20
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417
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Understanding Sleuth output for multiple samples
sleuth kallisto rna-seq written 6 months ago by Bharat Iyengar • 230
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299
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featureCounts with pseudobam
featurecounts salmon rna-seq pseudobam kallisto written 7 months ago by mccormack • 20 • updated 7 months ago by genomax ♦ 32k
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355
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What is the Sleuth intercept and how can Sleuth be used when you have >2 treatment types?
sleuth salmon kallisto rna-seq dte written 7 months ago by james.lloyd • 70
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276
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kallisto to metaseqR
R next-gen kallisto rna-seq written 8 months ago by bioinfo8 • 80
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733
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3
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Sleuth: Combined lrt and wt tests, clustered heatmap
R sleuth kallisto rna-seq heatmap written 8 months ago by bioinfo8 • 80
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1
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626
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1
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Is Sleuth a good package?
R sleuth kallisto rna-seq written 10 months ago by student-t • 380 • updated 10 months ago by Devon Ryan ♦ 70k
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