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Recent Replies
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Lila M
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rigth, it is a ChIP seq analysis
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Which type data are we talking about? What was the experiment? There are literally no details in this question right now. It the assay meas…
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Thank you. I understood ploidy part.
My genome is supposed to belong to diploid Candida albicans. And genome size of diploid Candida alb…
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To give more precision to the @genomax comment:
`agat_sp_compare_annotations.pl` will tell you the differences.
Then you can choose to …
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No problem. I am not really familiar with what the GSEA implementation from the Broad institute does. I personally use fgsea from Bioconduc…
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you mean in the call peaks? And what are those 232 not annotated peaks?aren't they tss associated to not transcribed genes?
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Compare annotation tool `agat_sp_compare_annotations.pl` from [AGAT toolkit][1]. Install [**AGAT**][2] using `conda`.
[1]: https://gith…
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I am really sorry for asking for clarification because I am a beginner.
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I work in a research laboratory that has specific demands that make the general pipeline not fit, I have to create it from scratch, but tha…
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Thank you for your response! It worked !!!
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I made this perl script to compare two GFF files. It might be useful after some modifications (changing GFF version to 2?). Needs BioPerl i…
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Hi,
Thank you for your help!
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Make it simple and download that RDS file from command line with something like `wget`, this will give a status bar. Once downloaded just r…
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