0
votes
0
replies
34
views
0
votes
0
replies
25
views
0
votes
0
replies
43
views
1
vote
4
replies
131
views
4 hours ago by
nicole.kavanagh
•
0
0
votes
1
reply
73
views
updated 6 hours ago by
Ram
43k
•
written 8 hours ago by
ernestine.kubi
•
0
0
votes
0
replies
47
views
0
votes
1
reply
141
views
0
votes
1
reply
121
views
0
votes
1
reply
276
views
updated 20 hours ago by
Ram
43k
•
written 1 day ago by
Dr Huma Naz
•
0
0
votes
5
replies
282
views
1
vote
2
replies
238
views
0
votes
1
reply
134
views
updated 6 hours ago by
Adam
▴
30
•
written 1 day ago by
Ahiad Chen Zion
•
0
Recent Votes
Recent Locations •
All
United Kingdom, 3 minutes ago
United States, 4 minutes ago
Australia, 7 minutes ago
Cambridge, MA, 10 minutes ago
Japan, 12 minutes ago
Canada, 20 minutes ago
Australia, 23 minutes ago
Recent Awards •
All
Popular Question to
mgranada3
▴
30
Popular Question to
maryak
▴
20
Popular Question to
nicole.kavanagh
•
0
Popular Question to
elcortegano
▴
200
Popular Question to
mathavanbioinfo
▴
90
Popular Question to
Jautis
▴
530
Recent Replies
Comment: Post-imputation plot
by
kl
▴
10
Ok yes I think my thought was that given these errors, I could remove the mismatches and flip the alleles which seem to need flipping based…
Comment: Bacterial plasmid analysis
by
nicole.kavanagh
•
0
I think I will perhaps use their predominant PlasmidFinder type to group plasmids together and create separate core phylogenies for each as…
Comment: Bacterial plasmid analysis
by
GenoMax
141k
Can you classify the plasmids based on function (resistance genes they are carrying or some other criteria). Sizes above are indicating a w…
Comment: DESeq2 processing problems
by
ATpoint
82k
Initially posted here https://support.bioconductor.org/p/9158036/ where I suggested to put code and data and noted that GEOquery returns ar…
Answer: Post-imputation plot
by
LChart
3.9k
I agree that some need to be flipped (A/T and C/G where your panel frequency is 1 - ref panel frequency). There are other variants which yo…
Comment: RNA editing sites based on DNA seq and RNA seq
by
Adam
▴
30
Are those 20% unaligned reads coming after hyper-editing detection?
Answer: How to find overlap of clusters in two seurat porject
by
Adam
▴
30
I think your best bet would be to use annotation mapping. You can use the features of your clusters in group 1 and apply them to group 2 to…
Answer: DESeq2 processing problems
by
Adam
▴
30
> when I put in the dataset, I am not able to run it for DEG analysis because system asks me to remove the first column which is of gene na…
Comment: Bacterial plasmid analysis
by
nicole.kavanagh
•
0
Thank you so much for your quick response, I have been searching scientific papers for about a week but have failed to come up with a reaso…
Comment: Bacterial plasmid analysis
by
GenoMax
141k
> however I'm not sure this would be appropriate in my case as the plasmid sequences are obviously much more diverse and vary in size
Can…
Answer: cnetplot category names are too long
by
bkleiboeker
▴
370
I'm sure someone could find a more elegant solution using `stringr::str_wrap`, but for a one-time solution I did this:
# my results of…
Comment: Telescope issue
by
GenoMax
141k
You could edit the SAM file but I wonder if this problem is present in your original fastq data file so if not inconvenient do the alignmen…
Comment: Mutect2 for mitochondria variant discovery
by
GenoMax
141k
> I keep getting error.
Without providing information about the actual error no one can help. Please edit the post and add this informati…
Comment: DESeq2 processing problems
by
Ram
43k
This is an open science community, not a place to write an email to Michael Love. Please address the entire community.
Traffic: 1699 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6